Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL4A5P29400 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL4A5P29400 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
COL4A5P29400 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC27.3■■□□□ 1.96
COL4A5P29400 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC27.3■■□□□ 1.96
COL4A5P29400 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC27.29■■□□□ 1.96
COL4A5P29400 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC27.29■■□□□ 1.96
COL4A5P29400 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
COL4A5P29400 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC27.29■■□□□ 1.96
COL4A5P29400 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC27.29■■□□□ 1.96
COL4A5P29400 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL4A5P29400 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL4A5P29400 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
COL4A5P29400 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC27.29■■□□□ 1.96
COL4A5P29400 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL4A5P29400 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL4A5P29400 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC27.29■■□□□ 1.96
COL4A5P29400 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC27.28■■□□□ 1.96
COL4A5P29400 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC27.28■■□□□ 1.96
COL4A5P29400 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
COL4A5P29400 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
COL4A5P29400 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
COL4A5P29400 STX7-201ENST00000367937 1090 ntTSL 5 BASIC27.27■■□□□ 1.96
COL4A5P29400 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
COL4A5P29400 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL4A5P29400 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC27.27■■□□□ 1.96
COL4A5P29400 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
COL4A5P29400 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL4A5P29400 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL4A5P29400 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
COL4A5P29400 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
COL4A5P29400 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC27.26■■□□□ 1.96
COL4A5P29400 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC27.26■■□□□ 1.96
COL4A5P29400 SHF-207ENST00000560540 2062 ntTSL 5 BASIC27.26■■□□□ 1.95
COL4A5P29400 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC27.26■■□□□ 1.95
COL4A5P29400 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC27.26■■□□□ 1.95
COL4A5P29400 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC27.26■■□□□ 1.95
COL4A5P29400 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC27.26■■□□□ 1.95
COL4A5P29400 DBI-210ENST00000542275 757 ntTSL 5 BASIC27.26■■□□□ 1.95
COL4A5P29400 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC27.26■■□□□ 1.95
COL4A5P29400 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
COL4A5P29400 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC27.25■■□□□ 1.95
COL4A5P29400 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
COL4A5P29400 CROCCP5-201ENST00000436658 830 ntBASIC27.25■■□□□ 1.95
COL4A5P29400 MAP2K4P1-201ENST00000438453 1195 ntBASIC27.25■■□□□ 1.95
COL4A5P29400 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
COL4A5P29400 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC27.25■■□□□ 1.95
COL4A5P29400 AC137761.2-201ENST00000561729 223 ntBASIC27.25■■□□□ 1.95
COL4A5P29400 AC145350.3-201ENST00000569033 163 ntBASIC27.25■■□□□ 1.95
COL4A5P29400 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC27.25■■□□□ 1.95
COL4A5P29400 AC105233.4-201ENST00000642045 216 ntBASIC27.25■■□□□ 1.95
COL4A5P29400 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC27.25■■□□□ 1.95
COL4A5P29400 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC27.25■■□□□ 1.95
COL4A5P29400 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
COL4A5P29400 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC27.24■■□□□ 1.95
COL4A5P29400 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL4A5P29400 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL4A5P29400 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC27.24■■□□□ 1.95
COL4A5P29400 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL4A5P29400 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.95
COL4A5P29400 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL4A5P29400 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
COL4A5P29400 HSCB-202ENST00000398941 955 ntTSL 2 BASIC27.24■■□□□ 1.95
COL4A5P29400 PPP1R14BP3-201ENST00000509033 445 ntBASIC27.24■■□□□ 1.95
COL4A5P29400 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC27.24■■□□□ 1.95
COL4A5P29400 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC27.24■■□□□ 1.95
COL4A5P29400 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
COL4A5P29400 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
COL4A5P29400 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
COL4A5P29400 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
COL4A5P29400 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC27.23■■□□□ 1.95
COL4A5P29400 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC27.23■■□□□ 1.95
COL4A5P29400 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
COL4A5P29400 AC004854.2-201ENST00000608450 1441 ntBASIC27.22■■□□□ 1.95
COL4A5P29400 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
COL4A5P29400 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL4A5P29400 GALNS-213ENST00000569433 723 ntTSL 3 BASIC27.22■■□□□ 1.95
COL4A5P29400 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL4A5P29400 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL4A5P29400 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
COL4A5P29400 ESRRAP2-201ENST00000418437 1549 ntBASIC27.21■■□□□ 1.95
COL4A5P29400 AC016769.1-201ENST00000409132 1010 ntBASIC27.21■■□□□ 1.95
COL4A5P29400 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC27.21■■□□□ 1.95
COL4A5P29400 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL4A5P29400 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC27.21■■□□□ 1.95
COL4A5P29400 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL4A5P29400 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
COL4A5P29400 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC27.21■■□□□ 1.95
COL4A5P29400 AP004607.4-201ENST00000530158 1459 ntBASIC27.21■■□□□ 1.95
COL4A5P29400 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL4A5P29400 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC27.21■■□□□ 1.95
COL4A5P29400 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC27.21■■□□□ 1.95
COL4A5P29400 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC27.21■■□□□ 1.95
COL4A5P29400 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC27.21■■□□□ 1.95
COL4A5P29400 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC27.2■■□□□ 1.95
COL4A5P29400 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
COL4A5P29400 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC27.2■■□□□ 1.94
COL4A5P29400 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
COL4A5P29400 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC27.2■■□□□ 1.94
COL4A5P29400 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC27.2■■□□□ 1.94
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms