Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.81■■□□□ 1.08
SIX3O95343 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SIX3O95343 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SIX3O95343 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.8■■□□□ 1.08
SIX3O95343 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SIX3O95343 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SIX3O95343 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
SIX3O95343 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
SIX3O95343 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
SIX3O95343 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.8■■□□□ 1.08
SIX3O95343 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
SIX3O95343 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.8■■□□□ 1.08
SIX3O95343 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC21.8■■□□□ 1.08
SIX3O95343 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
SIX3O95343 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.8■■□□□ 1.08
SIX3O95343 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SIX3O95343 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
SIX3O95343 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.79■■□□□ 1.08
SIX3O95343 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
SIX3O95343 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SIX3O95343 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SIX3O95343 AC144652.1-201ENST00000609974 1624 ntBASIC21.79■■□□□ 1.08
SIX3O95343 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
SIX3O95343 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SIX3O95343 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX3O95343 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.78■■□□□ 1.08
SIX3O95343 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.78■■□□□ 1.08
SIX3O95343 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.78■■□□□ 1.08
SIX3O95343 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX3O95343 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX3O95343 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SIX3O95343 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.78■■□□□ 1.08
SIX3O95343 MIR6722-201ENST00000617286 78 ntBASIC21.78■■□□□ 1.08
SIX3O95343 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.78■■□□□ 1.08
SIX3O95343 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SIX3O95343 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX3O95343 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.77■■□□□ 1.08
SIX3O95343 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX3O95343 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.77■■□□□ 1.08
SIX3O95343 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX3O95343 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.77■■□□□ 1.08
SIX3O95343 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
SIX3O95343 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX3O95343 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX3O95343 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.77■■□□□ 1.08
SIX3O95343 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX3O95343 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX3O95343 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.77■■□□□ 1.08
SIX3O95343 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.77■■□□□ 1.08
SIX3O95343 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
SIX3O95343 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.77■■□□□ 1.08
SIX3O95343 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.77■■□□□ 1.08
SIX3O95343 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.77■■□□□ 1.07
SIX3O95343 AC005703.6-201ENST00000623265 1329 ntBASIC21.77■■□□□ 1.07
SIX3O95343 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.07
SIX3O95343 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
SIX3O95343 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.76■■□□□ 1.07
SIX3O95343 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX3O95343 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.76■■□□□ 1.07
SIX3O95343 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SIX3O95343 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
SIX3O95343 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
SIX3O95343 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SIX3O95343 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX3O95343 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SIX3O95343 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX3O95343 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX3O95343 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.75■■□□□ 1.07
SIX3O95343 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX3O95343 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX3O95343 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.75■■□□□ 1.07
SIX3O95343 RARRES2P1-201ENST00000474487 481 ntBASIC21.75■■□□□ 1.07
SIX3O95343 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX3O95343 LINC00565-201ENST00000562710 2331 ntBASIC21.75■■□□□ 1.07
SIX3O95343 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SIX3O95343 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX3O95343 LINC00526-201ENST00000581067 1875 ntBASIC21.75■■□□□ 1.07
SIX3O95343 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
SIX3O95343 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.74■■□□□ 1.07
SIX3O95343 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.74■■□□□ 1.07
SIX3O95343 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.74■■□□□ 1.07
SIX3O95343 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.74■■□□□ 1.07
SIX3O95343 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.74■■□□□ 1.07
SIX3O95343 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SIX3O95343 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
SIX3O95343 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
SIX3O95343 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX3O95343 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms