Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PROM1O43490 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
PROM1O43490 AL353803.4-201ENST00000565882 1934 ntBASIC21.17■□□□□ 0.98
PROM1O43490 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PROM1O43490 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PROM1O43490 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PROM1O43490 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PROM1O43490 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
PROM1O43490 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.16■□□□□ 0.98
PROM1O43490 C17orf82-201ENST00000623772 1530 ntBASIC21.16■□□□□ 0.98
PROM1O43490 ASB1-202ENST00000409297 878 ntTSL 5 BASIC21.16■□□□□ 0.98
PROM1O43490 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
PROM1O43490 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.16■□□□□ 0.98
PROM1O43490 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PROM1O43490 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PROM1O43490 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
PROM1O43490 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.15■□□□□ 0.98
PROM1O43490 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PROM1O43490 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.15■□□□□ 0.98
PROM1O43490 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PROM1O43490 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PROM1O43490 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
PROM1O43490 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
PROM1O43490 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC21.14■□□□□ 0.97
PROM1O43490 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
PROM1O43490 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PROM1O43490 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.14■□□□□ 0.97
PROM1O43490 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.14■□□□□ 0.97
PROM1O43490 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.14■□□□□ 0.97
PROM1O43490 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
PROM1O43490 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PROM1O43490 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.13■□□□□ 0.97
PROM1O43490 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.13■□□□□ 0.97
PROM1O43490 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PROM1O43490 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PROM1O43490 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.13■□□□□ 0.97
PROM1O43490 LINC01529-204ENST00000636474 1715 ntBASIC21.13■□□□□ 0.97
PROM1O43490 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PROM1O43490 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.13■□□□□ 0.97
PROM1O43490 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PROM1O43490 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.13■□□□□ 0.97
PROM1O43490 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.13■□□□□ 0.97
PROM1O43490 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PROM1O43490 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PROM1O43490 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.13■□□□□ 0.97
PROM1O43490 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
PROM1O43490 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PROM1O43490 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PROM1O43490 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PROM1O43490 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PROM1O43490 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PROM1O43490 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
PROM1O43490 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.12■□□□□ 0.97
PROM1O43490 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
PROM1O43490 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.12■□□□□ 0.97
PROM1O43490 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.12■□□□□ 0.97
PROM1O43490 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.12■□□□□ 0.97
PROM1O43490 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.12■□□□□ 0.97
PROM1O43490 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC21.12■□□□□ 0.97
PROM1O43490 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PROM1O43490 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.12■□□□□ 0.97
PROM1O43490 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PROM1O43490 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PROM1O43490 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PROM1O43490 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PROM1O43490 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PROM1O43490 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.11■□□□□ 0.97
PROM1O43490 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PROM1O43490 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.11■□□□□ 0.97
PROM1O43490 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PROM1O43490 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC21.11■□□□□ 0.97
PROM1O43490 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC21.11■□□□□ 0.97
PROM1O43490 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.11■□□□□ 0.97
PROM1O43490 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.11■□□□□ 0.97
PROM1O43490 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
PROM1O43490 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PROM1O43490 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PROM1O43490 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.1■□□□□ 0.97
PROM1O43490 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PROM1O43490 AL512631.2-201ENST00000604634 923 ntBASIC21.1■□□□□ 0.97
PROM1O43490 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PROM1O43490 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PROM1O43490 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
PROM1O43490 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
PROM1O43490 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
PROM1O43490 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
PROM1O43490 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PROM1O43490 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.09■□□□□ 0.97
PROM1O43490 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
PROM1O43490 DUX4L4-201ENST00000566884 1269 ntBASIC21.09■□□□□ 0.97
PROM1O43490 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
PROM1O43490 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.09■□□□□ 0.97
PROM1O43490 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.09■□□□□ 0.97
PROM1O43490 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
PROM1O43490 C9orf163-202ENST00000624034 2573 ntBASIC21.09■□□□□ 0.97
PROM1O43490 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.09■□□□□ 0.97
PROM1O43490 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC21.09■□□□□ 0.97
PROM1O43490 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PROM1O43490 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.08■□□□□ 0.97
PROM1O43490 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms