Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 ZNF473-203ENST00000445728 2833 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 ESRRB-204ENST00000509242 2849 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 BTNL8-201ENST00000231229 2229 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 TVP23A-201ENST00000299866 3360 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 MPHOSPH10-201ENST00000244230 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 PAM-203ENST00000346918 3302 ntTSL 5 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 SARS-202ENST00000369923 1882 ntTSL 5 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 AP1B1-202ENST00000357586 4176 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 FAM76A-204ENST00000373954 3567 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 SMS-201ENST00000379404 1174 ntTSL 3 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 LINC00686-201ENST00000435412 332 ntTSL 3 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 VDAC1P1-201ENST00000439229 848 ntBASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 AC006033.1-201ENST00000440505 426 ntBASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 AC004898.1-201ENST00000451057 766 ntBASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 SKA2-205ENST00000580541 689 ntTSL 3 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 AC008805.1-201ENST00000590892 364 ntBASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 NTNG1-204ENST00000370067 4628 ntTSL 5 BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
AMBRA1Q9C0C7 TPM2-204ENST00000378300 1771 ntTSL 3 BASIC12.96□□□□□ -0.34
AMBRA1Q9C0C7 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC12.96□□□□□ -0.34
AMBRA1Q9C0C7 CCDC186-201ENST00000369285 2035 ntTSL 2 BASIC12.96□□□□□ -0.34
AMBRA1Q9C0C7 HDAC8-207ENST00000373573 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
AMBRA1Q9C0C7 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
AMBRA1Q9C0C7 KCNMA1-285ENST00000640605 3864 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
AMBRA1Q9C0C7 KIF3A-208ENST00000618515 3333 ntTSL 5 BASIC12.96□□□□□ -0.34
AMBRA1Q9C0C7 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
AMBRA1Q9C0C7 MEG3-213ENST00000455531 4867 ntTSL 2 BASIC12.96□□□□□ -0.34
AMBRA1Q9C0C7 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC12.96□□□□□ -0.34
AMBRA1Q9C0C7 AC124319.4-201ENST00000622931 2161 ntBASIC12.96□□□□□ -0.34
AMBRA1Q9C0C7 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 PLEKHG3-203ENST00000471182 3106 ntTSL 5 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 ITFG1-204ENST00000544001 1849 ntTSL 2 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 PIP5K1A-204ENST00000409426 3737 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 UBE2V1-224ENST00000625172 2297 ntTSL 4 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 MTCL1-202ENST00000359865 6093 ntAPPRIS P2 TSL 2 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 WDR66-202ENST00000397454 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 MSRA-201ENST00000317173 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 AC018735.1-201ENST00000437208 1502 ntBASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 AC138761.4-201ENST00000578881 1514 ntTSL 3 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 S1PR1-201ENST00000305352 2909 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 ZFYVE27-201ENST00000337540 2927 ntTSL 2 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 KRTAP10-13P-201ENST00000412914 571 ntBASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 HNRNPA1P63-201ENST00000427917 963 ntBASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 RPL18P13-201ENST00000478088 569 ntBASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 ERH-203ENST00000557016 1124 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 EMC4-209ENST00000559421 497 ntTSL 2 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 MIR3615-201ENST00000581999 87 ntBASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 AL023803.2-201ENST00000620080 638 ntBASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 SKP2-209ENST00000620197 3255 ntTSL 2 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 UBE3A-220ENST00000630424 5075 ntAPPRIS P3 TSL 5 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 AC008764.8-201ENST00000623966 2717 ntBASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 MPP4-203ENST00000396886 2250 ntTSL 2 BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 GNB5-203ENST00000396335 2678 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
AMBRA1Q9C0C7 GJB5-201ENST00000338513 1355 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
AMBRA1Q9C0C7 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
AMBRA1Q9C0C7 CRYBG2-201ENST00000308182 5245 ntAPPRIS P5 TSL 5 BASIC12.94□□□□□ -0.34
AMBRA1Q9C0C7 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
AMBRA1Q9C0C7 ARHGEF9-226ENST00000636392 1920 ntTSL 5 BASIC12.94□□□□□ -0.34
AMBRA1Q9C0C7 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
AMBRA1Q9C0C7 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
AMBRA1Q9C0C7 SMG6-203ENST00000536871 1865 ntTSL 2 BASIC12.94□□□□□ -0.34
AMBRA1Q9C0C7 GAPDHS-201ENST00000222286 1489 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms