RNA–Protein interactions for RNA: ENST00000299866.12

TVP23A-201, Transcript of trans-golgi network vesicle protein 23 homolog A, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TVP23A, Length 3,360 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TVP23A-201ENST00000299866 NISCHQ9Y2I1 1504 aa24.67■■□□□ 1.54
TVP23A-201ENST00000299866 SHROOM4Q9ULL8 1493 aa22.07■■□□□ 1.12
TVP23A-201ENST00000299866 SUPT5HO00267 1087 aaKnown RBP21.98■■□□□ 1.11
TVP23A-201ENST00000299866 HRCP23327 699 aa21.98■■□□□ 1.11
TVP23A-201ENST00000299866 PCGF6Q9BYE7 350 aa21.69■■□□□ 1.06
TVP23A-201ENST00000299866 PPARGC1BQ86YN6 1023 aaKnown RBP21.65■■□□□ 1.06
TVP23A-201ENST00000299866 MYO15BQ96JP2 1530 aa21.53■■□□□ 1.04
TVP23A-201ENST00000299866 CHIC1Q5VXU3 224 aa21.48■■□□□ 1.03
TVP23A-201ENST00000299866 LOC105371045A0A1W2PR82 267 aa21.07■□□□□ 0.96
TVP23A-201ENST00000299866 PELP1Q8IZL8 1130 aaKnown RBP20.99■□□□□ 0.95
TVP23A-201ENST00000299866 DCAF1Q9Y4B6 1507 aa20.97■□□□□ 0.95
TVP23A-201ENST00000299866 ZCCHC6Q5VYS8 1495 aaKnown RBP20.95■□□□□ 0.94
TVP23A-201ENST00000299866 DCAF8L2P0C7V8 631 aa20.94■□□□□ 0.94
TVP23A-201ENST00000299866 TRIM26Q12899 539 aaPredicted RBP20.92■□□□□ 0.94
TVP23A-201ENST00000299866 SCAF1Q9H7N4 1312 aaKnown RBP20.77■□□□□ 0.92
TVP23A-201ENST00000299866 ZEB1P37275 1124 aaPredicted RBP20.68■□□□□ 0.9
TVP23A-201ENST00000299866 CCDC180Q9P1Z9 1646 aa20.65■□□□□ 0.9
TVP23A-201ENST00000299866 FAM9AQ8IZU1 332 aaPredicted RBP20.38■□□□□ 0.85
TVP23A-201ENST00000299866 EHMT2Q96KQ7 1210 aa20.38■□□□□ 0.85
TVP23A-201ENST00000299866 ACIN1Q9UKV3 1341 aaKnown RBP20.28■□□□□ 0.84
TVP23A-201ENST00000299866 TRIM41Q8WV44 630 aa20.27■□□□□ 0.84
TVP23A-201ENST00000299866 NEUROD1Q13562 356 aa20.27■□□□□ 0.84
TVP23A-201ENST00000299866 GTF3C3Q9Y5Q9 886 aa20.17■□□□□ 0.82
TVP23A-201ENST00000299866 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.14■□□□□ 0.82
TVP23A-201ENST00000299866 MYT1Q01538 1121 aa20.1■□□□□ 0.81
TVP23A-201ENST00000299866 CCER1Q8TC90 406 aaPredicted RBP20.1■□□□□ 0.81
TVP23A-201ENST00000299866 CENPBP07199 599 aaPredicted RBP20.06■□□□□ 0.8
TVP23A-201ENST00000299866 DIEXFQ68CQ4 756 aaKnown RBP20.03■□□□□ 0.8
TVP23A-201ENST00000299866 RSF1Q96T23 1441 aaPredicted RBP19.9■□□□□ 0.78
TVP23A-201ENST00000299866 ABCC9O60706 1549 aa19.87■□□□□ 0.77
TVP23A-201ENST00000299866 TTBK1Q5TCY1 1321 aaPredicted RBP19.86■□□□□ 0.77
TVP23A-201ENST00000299866 YTHDC1Q96MU7 727 aaKnown RBP19.81■□□□□ 0.76
TVP23A-201ENST00000299866 RB1CC1Q8TDY2 1594 aa19.79■□□□□ 0.76
TVP23A-201ENST00000299866 ZNF316A6NFI3 1004 aaPredicted RBP19.64■□□□□ 0.73
TVP23A-201ENST00000299866 SCRIBQ14160 1630 aa19.63■□□□□ 0.73
TVP23A-201ENST00000299866 MIER1Q8N108 512 aa19.54■□□□□ 0.72
TVP23A-201ENST00000299866 CECR2Q9BXF3 1484 aa19.4■□□□□ 0.7
TVP23A-201ENST00000299866 HNRNPUL2Q1KMD3 747 aaKnown RBP19.34■□□□□ 0.69
TVP23A-201ENST00000299866 CEP162Q5TB80 1403 aa19.33■□□□□ 0.69
TVP23A-201ENST00000299866 MROH2BQ7Z745 1585 aa19.32■□□□□ 0.68
TVP23A-201ENST00000299866 WRNQ14191 1432 aaPredicted RBP eCLIP19.32■□□□□ 0.68
TVP23A-201ENST00000299866 UBTFP17480 764 aaKnown RBP19.3■□□□□ 0.68
TVP23A-201ENST00000299866 WIZO95785 1651 aa19.24■□□□□ 0.67
TVP23A-201ENST00000299866 CCDC88BA6NC98 1476 aa19.2■□□□□ 0.66
TVP23A-201ENST00000299866 TNIKQ9UKE5 1360 aa19.18■□□□□ 0.66
TVP23A-201ENST00000299866 SUPT16HQ9Y5B9 1047 aaKnown RBP19.17■□□□□ 0.66
TVP23A-201ENST00000299866 ABCC8Q09428 1581 aa19.17■□□□□ 0.66
TVP23A-201ENST00000299866 SOGA1O94964 1423 aa19.16■□□□□ 0.66
TVP23A-201ENST00000299866 CSRNP3Q8WYN3 585 aa19.13■□□□□ 0.65
TVP23A-201ENST00000299866 TSHZ2Q9NRE2 1034 aa19.07■□□□□ 0.64
TVP23A-201ENST00000299866 EIF4G1Q04637 1599 aaKnown RBP19.06■□□□□ 0.64
TVP23A-201ENST00000299866 RUSC2Q8N2Y8 1516 aa19.05■□□□□ 0.64
TVP23A-201ENST00000299866 ANP32EQ9BTT0 268 aa19.04■□□□□ 0.64
TVP23A-201ENST00000299866 BAZ1AQ9NRL2 1556 aaPredicted RBP19.01■□□□□ 0.63
TVP23A-201ENST00000299866 CLSPNQ9HAW4 1339 aa19■□□□□ 0.63
TVP23A-201ENST00000299866 RANGAP1P46060 587 aaPredicted RBP18.98■□□□□ 0.63
TVP23A-201ENST00000299866 APLP2Q06481 763 aa18.97■□□□□ 0.63
TVP23A-201ENST00000299866 BCL11AQ9H165 835 aa18.96■□□□□ 0.63
TVP23A-201ENST00000299866 GOLGA3Q08378 1498 aa18.94■□□□□ 0.62
TVP23A-201ENST00000299866 BCANQ96GW7 911 aa18.92■□□□□ 0.62
TVP23A-201ENST00000299866 EEA1Q15075 1411 aa18.91■□□□□ 0.62
TVP23A-201ENST00000299866 CLIP1P30622 1438 aa18.85■□□□□ 0.61
TVP23A-201ENST00000299866 KCNH8Q96L42 1107 aa18.82■□□□□ 0.6
TVP23A-201ENST00000299866 NACADO15069 1562 aa18.82■□□□□ 0.6
TVP23A-201ENST00000299866 TOP2AP11388 1531 aaKnown RBP18.81■□□□□ 0.6
TVP23A-201ENST00000299866 DHX57Q6P158 1386 aaKnown RBP18.78■□□□□ 0.6
TVP23A-201ENST00000299866 SMARCA2P51531 1590 aa18.78■□□□□ 0.6
TVP23A-201ENST00000299866 VPS8Q8N3P4 1428 aa18.77■□□□□ 0.6
TVP23A-201ENST00000299866 FKBP8Q14318 412 aa18.76■□□□□ 0.59
TVP23A-201ENST00000299866 CEP164Q9UPV0 1460 aa18.73■□□□□ 0.59
TVP23A-201ENST00000299866 ITGAEP38570 1179 aa18.64■□□□□ 0.57
TVP23A-201ENST00000299866 RBM19Q9Y4C8 960 aaKnown RBP18.64■□□□□ 0.57
TVP23A-201ENST00000299866 SMARCA4P51532 1647 aa18.62■□□□□ 0.57
TVP23A-201ENST00000299866 RAPGEF2Q9Y4G8 1499 aa18.61■□□□□ 0.57
TVP23A-201ENST00000299866 KANK4Q5T7N3 995 aaPredicted RBP18.61■□□□□ 0.57
TVP23A-201ENST00000299866 NEFLP07196 543 aa18.6■□□□□ 0.57
TVP23A-201ENST00000299866 DDX10Q13206 875 aaKnown RBP18.58■□□□□ 0.57
TVP23A-201ENST00000299866 KIF21BO75037 1637 aa18.58■□□□□ 0.57
TVP23A-201ENST00000299866 TRIM52Q96A61 297 aa18.53■□□□□ 0.56
TVP23A-201ENST00000299866 SYNJ1O43426 1573 aa18.52■□□□□ 0.55
TVP23A-201ENST00000299866 BAZ1BQ9UIG0 1483 aaKnown RBP18.5■□□□□ 0.55
TVP23A-201ENST00000299866 HIRIP3Q9BW71 556 aaPredicted RBP18.46■□□□□ 0.55
TVP23A-201ENST00000299866 MSH5O43196 834 aa18.45■□□□□ 0.54
TVP23A-201ENST00000299866 SIN3AQ96ST3 1273 aa18.4■□□□□ 0.54
TVP23A-201ENST00000299866 CCNB3Q8WWL7 1395 aa18.39■□□□□ 0.54
TVP23A-201ENST00000299866 ERICH6Q7L0X2 663 aa18.39■□□□□ 0.53
TVP23A-201ENST00000299866 RRBP1Q9P2E9 1410 aaKnown RBP18.38■□□□□ 0.53
TVP23A-201ENST00000299866 ARAP1Q96P48 1450 aa18.38■□□□□ 0.53
TVP23A-201ENST00000299866 PABPN1Q86U42 306 aaKnown RBP eCLIP18.38■□□□□ 0.53
TVP23A-201ENST00000299866 RAB3GAP2Q9H2M9 1393 aa18.37■□□□□ 0.53
TVP23A-201ENST00000299866 ANP32CO43423 234 aa18.35■□□□□ 0.53
TVP23A-201ENST00000299866 PPP1R15AO75807 674 aaPredicted RBP18.34■□□□□ 0.53
TVP23A-201ENST00000299866 IRX6P78412 446 aaPredicted RBP18.34■□□□□ 0.53
TVP23A-201ENST00000299866 CUX2O14529 1486 aa18.3■□□□□ 0.52
TVP23A-201ENST00000299866 WDR97A6NE52 1622 aa18.29■□□□□ 0.52
TVP23A-201ENST00000299866 CDK11AQ9UQ88 783 aaPredicted RBP18.28■□□□□ 0.52
TVP23A-201ENST00000299866 MAPKBP1O60336 1514 aa18.28■□□□□ 0.52
TVP23A-201ENST00000299866 CCER2I3L3R5 266 aa18.28■□□□□ 0.52
TVP23A-201ENST00000299866 FAM50AQ14320 339 aaKnown RBP18.24■□□□□ 0.51
TVP23A-201ENST00000299866 FANCIQ9NVI1 1328 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms