Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC15.71■□□□□ 0.11
SMARCA1P28370 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC15.71■□□□□ 0.11
SMARCA1P28370 PIN4P1-201ENST00000451079 396 ntBASIC15.71■□□□□ 0.11
SMARCA1P28370 ESRRAP2-203ENST00000453309 822 ntTSL 5 BASIC15.71■□□□□ 0.11
SMARCA1P28370 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 LDHBP1-201ENST00000455730 1119 ntBASIC15.71■□□□□ 0.11
SMARCA1P28370 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC15.71■□□□□ 0.11
SMARCA1P28370 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC15.71■□□□□ 0.11
SMARCA1P28370 ALG1L6P-201ENST00000515248 758 ntBASIC15.71■□□□□ 0.11
SMARCA1P28370 AL161668.2-201ENST00000531638 492 ntTSL 5 BASIC15.71■□□□□ 0.11
SMARCA1P28370 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC15.71■□□□□ 0.11
SMARCA1P28370 RPAIN-205ENST00000536255 1057 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 KCCAT198-201ENST00000549251 549 ntTSL 4 BASIC15.71■□□□□ 0.11
SMARCA1P28370 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC15.71■□□□□ 0.11
SMARCA1P28370 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
SMARCA1P28370 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC15.71■□□□□ 0.11
SMARCA1P28370 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
SMARCA1P28370 CCT2-201ENST00000299300 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.71■□□□□ 0.11
SMARCA1P28370 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
SMARCA1P28370 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
SMARCA1P28370 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC15.71■□□□□ 0.1
SMARCA1P28370 CATSPERE-203ENST00000366534 3333 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
SMARCA1P28370 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC15.71■□□□□ 0.1
SMARCA1P28370 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.71■□□□□ 0.1
SMARCA1P28370 GCOM1-214ENST00000587652 2329 ntAPPRIS ALT2 TSL 2 BASIC15.71■□□□□ 0.1
SMARCA1P28370 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SMARCA1P28370 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
SMARCA1P28370 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
SMARCA1P28370 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.7■□□□□ 0.1
SMARCA1P28370 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SMARCA1P28370 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC15.7■□□□□ 0.1
SMARCA1P28370 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SMARCA1P28370 ADAM17-204ENST00000618923 1881 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SMARCA1P28370 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SMARCA1P28370 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SMARCA1P28370 SNORD23-201ENST00000408876 110 ntBASIC15.7■□□□□ 0.1
SMARCA1P28370 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC15.7■□□□□ 0.1
SMARCA1P28370 LINC02026-202ENST00000414309 772 ntTSL 3 BASIC15.7■□□□□ 0.1
SMARCA1P28370 CCL24-202ENST00000416943 585 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SMARCA1P28370 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC15.7■□□□□ 0.1
SMARCA1P28370 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC15.7■□□□□ 0.1
SMARCA1P28370 BHMT-206ENST00000524080 1207 ntTSL 2 BASIC15.7■□□□□ 0.1
SMARCA1P28370 AL359219.1-201ENST00000556311 934 ntBASIC15.7■□□□□ 0.1
SMARCA1P28370 RN7SL134P-201ENST00000579756 303 ntBASIC15.7■□□□□ 0.1
SMARCA1P28370 U62317.3-201ENST00000608319 855 ntBASIC15.7■□□□□ 0.1
SMARCA1P28370 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
SMARCA1P28370 AP000553.2-201ENST00000609038 441 ntBASIC15.7■□□□□ 0.1
SMARCA1P28370 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC15.7■□□□□ 0.1
SMARCA1P28370 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC15.7■□□□□ 0.1
SMARCA1P28370 PSMA6-215ENST00000622405 978 ntTSL 2 BASIC15.7■□□□□ 0.1
SMARCA1P28370 PSMA6-217ENST00000628955 364 ntTSL 5 BASIC15.7■□□□□ 0.1
SMARCA1P28370 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SMARCA1P28370 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
SMARCA1P28370 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC15.7■□□□□ 0.1
SMARCA1P28370 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SMARCA1P28370 SH2D7-202ENST00000409568 2162 ntTSL 5 BASIC15.7■□□□□ 0.1
SMARCA1P28370 MKL1-212ENST00000618417 1842 ntTSL 5 BASIC15.7■□□□□ 0.1
SMARCA1P28370 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SMARCA1P28370 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
SMARCA1P28370 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
SMARCA1P28370 LINC00943-204ENST00000537374 1688 ntTSL 5 BASIC15.7■□□□□ 0.1
SMARCA1P28370 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
SMARCA1P28370 CAMKK2-204ENST00000392473 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 ZNRF4-201ENST00000222033 1426 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
SMARCA1P28370 RNF34-211ENST00000613529 1449 ntTSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 PID1-202ENST00000392054 2745 ntTSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 GBAP1-208ENST00000566701 1546 ntBASIC15.69■□□□□ 0.1
SMARCA1P28370 SLC4A11-207ENST00000539553 2832 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 NME1-209ENST00000511355 1645 ntTSL 5 BASIC15.69■□□□□ 0.1
SMARCA1P28370 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 BHLHE40-AS1-204ENST00000620618 2355 ntTSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 AC012531.1-201ENST00000562848 2680 ntBASIC15.69■□□□□ 0.1
SMARCA1P28370 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.69■□□□□ 0.1
SMARCA1P28370 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 RPRD2-201ENST00000369067 1043 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 MRPL36-201ENST00000382647 587 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
SMARCA1P28370 FAM3B-203ENST00000398647 864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 FAM3B-204ENST00000398652 1125 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 MRPS12-202ENST00000402029 929 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 BCAS2P2-201ENST00000425064 674 ntBASIC15.69■□□□□ 0.1
SMARCA1P28370 GCSHP3-201ENST00000431120 391 ntBASIC15.69■□□□□ 0.1
SMARCA1P28370 AL451069.3-201ENST00000450206 1013 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC15.69■□□□□ 0.1
SMARCA1P28370 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC15.69■□□□□ 0.1
SMARCA1P28370 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SMARCA1P28370 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC15.69■□□□□ 0.1
SMARCA1P28370 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC15.69■□□□□ 0.1
SMARCA1P28370 AL591926.3-201ENST00000611630 238 ntBASIC15.69■□□□□ 0.1
SMARCA1P28370 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms