Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LRCH3Q96II8 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LRCH3Q96II8 VPS28-202ENST00000377348 1097 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LRCH3Q96II8 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 ACTBP14-201ENST00000411655 1089 ntBASIC14.97□□□□□ -0.01
LRCH3Q96II8 AC004771.1-201ENST00000438266 583 ntTSL 2 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 CHCHD2P6-201ENST00000454346 447 ntBASIC14.97□□□□□ -0.01
LRCH3Q96II8 HTR4-207ENST00000520514 1236 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LRCH3Q96II8 VPS28-210ENST00000529182 1010 ntTSL 2 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 C3orf84-203ENST00000545770 706 ntAPPRIS P2 TSL 5 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 BCAR1P1-201ENST00000553953 636 ntBASIC14.97□□□□□ -0.01
LRCH3Q96II8 NPTN-205ENST00000563691 1214 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LRCH3Q96II8 CLDN6-203ENST00000572154 461 ntTSL 3 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 ZNF850-201ENST00000589390 523 ntTSL 3 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 AC005332.2-201ENST00000590010 930 ntBASIC14.97□□□□□ -0.01
LRCH3Q96II8 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 C12orf45-205ENST00000622317 1078 ntTSL 5 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 Metazoa_SRP.91-201ENST00000622745 281 ntBASIC14.97□□□□□ -0.01
LRCH3Q96II8 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LRCH3Q96II8 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LRCH3Q96II8 TMEM186-201ENST00000333050 1448 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LRCH3Q96II8 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
LRCH3Q96II8 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
LRCH3Q96II8 AC009053.1-204ENST00000429810 2355 ntTSL 2 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
LRCH3Q96II8 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
LRCH3Q96II8 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 LINC01230-201ENST00000625222 3017 ntBASIC14.96□□□□□ -0.01
LRCH3Q96II8 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 MIR766-201ENST00000390223 111 ntBASIC14.96□□□□□ -0.01
LRCH3Q96II8 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 MKL1-204ENST00000402630 747 ntTSL 2 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 SLC2A11-208ENST00000405847 730 ntTSL 2 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 AL392046.1-202ENST00000457255 521 ntTSL 5 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 AC117500.1-201ENST00000497352 755 ntBASIC14.96□□□□□ -0.01
LRCH3Q96II8 ACTR6P1-201ENST00000514311 1104 ntBASIC14.96□□□□□ -0.01
LRCH3Q96II8 NDRG1-209ENST00000518176 888 ntTSL 2 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 SERPINE3-203ENST00000521255 1439 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 UCP2-202ENST00000536983 1413 ntTSL 5 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 LINC02274-201ENST00000555539 1174 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 MT1X-202ENST00000562939 538 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 AC026461.1-201ENST00000567563 551 ntTSL 4 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 CCND3P2-201ENST00000579393 537 ntBASIC14.96□□□□□ -0.01
LRCH3Q96II8 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 BX510359.7-201ENST00000619819 630 ntBASIC14.96□□□□□ -0.01
LRCH3Q96II8 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC14.96□□□□□ -0.01
LRCH3Q96II8 YWHAE-208ENST00000571732 1818 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
LRCH3Q96II8 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
LRCH3Q96II8 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LRCH3Q96II8 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LRCH3Q96II8 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
LRCH3Q96II8 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.02
LRCH3Q96II8 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LRCH3Q96II8 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LRCH3Q96II8 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
LRCH3Q96II8 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LRCH3Q96II8 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC14.95□□□□□ -0.02
LRCH3Q96II8 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LRCH3Q96II8 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LRCH3Q96II8 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC14.95□□□□□ -0.02
LRCH3Q96II8 AC008620.2-201ENST00000510294 1569 ntBASIC14.95□□□□□ -0.02
LRCH3Q96II8 APBB1-220ENST00000609331 1574 ntTSL 5 BASIC14.95□□□□□ -0.02
LRCH3Q96II8 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC14.95□□□□□ -0.02
LRCH3Q96II8 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LRCH3Q96II8 ACE3P-201ENST00000423435 1973 ntBASIC14.95□□□□□ -0.02
LRCH3Q96II8 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
LRCH3Q96II8 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LRCH3Q96II8 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC14.95□□□□□ -0.02
LRCH3Q96II8 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LRCH3Q96II8 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.95□□□□□ -0.02
LRCH3Q96II8 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LRCH3Q96II8 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LRCH3Q96II8 MAL-202ENST00000349807 705 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LRCH3Q96II8 RPL10-203ENST00000406022 748 ntTSL 3 BASIC14.95□□□□□ -0.02
LRCH3Q96II8 SNORD88B-201ENST00000408454 91 ntBASIC14.95□□□□□ -0.02
LRCH3Q96II8 AC010086.2-201ENST00000428616 226 ntBASIC14.95□□□□□ -0.02
LRCH3Q96II8 AC005722.1-201ENST00000431878 964 ntBASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.8 ms