Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 MLXIPL-204ENST00000414749 3224 ntAPPRIS ALT2 TSL 1 (best) BASIC12.79□□□□□ -0.36
RFC3P40938 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC12.79□□□□□ -0.36
RFC3P40938 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC12.78□□□□□ -0.36
RFC3P40938 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC12.78□□□□□ -0.36
RFC3P40938 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
RFC3P40938 AC020910.6-201ENST00000623084 1459 ntBASIC12.78□□□□□ -0.36
RFC3P40938 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
RFC3P40938 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 IL21R-204ENST00000564089 3009 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
RFC3P40938 METTL7B-201ENST00000394252 1506 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
RFC3P40938 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 NTM-202ENST00000374786 3190 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC12.78□□□□□ -0.36
RFC3P40938 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC12.78□□□□□ -0.36
RFC3P40938 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
RFC3P40938 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 AL356056.1-201ENST00000437899 369 ntTSL 5 BASIC12.78□□□□□ -0.36
RFC3P40938 SGO1-AS1-201ENST00000441442 499 ntTSL 4 BASIC12.78□□□□□ -0.36
RFC3P40938 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC12.78□□□□□ -0.36
RFC3P40938 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC12.78□□□□□ -0.36
RFC3P40938 AC108474.1-201ENST00000507776 421 ntTSL 3 BASIC12.78□□□□□ -0.36
RFC3P40938 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC12.78□□□□□ -0.36
RFC3P40938 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC12.78□□□□□ -0.36
RFC3P40938 AC140113.1-201ENST00000603467 169 ntBASIC12.78□□□□□ -0.36
RFC3P40938 LINC00244-201ENST00000625073 613 ntBASIC12.78□□□□□ -0.36
RFC3P40938 C1orf232-202ENST00000635463 466 ntAPPRIS ALT2 TSL 2 BASIC12.78□□□□□ -0.36
RFC3P40938 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC12.78□□□□□ -0.36
RFC3P40938 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
RFC3P40938 AL512306.2-201ENST00000444037 2219 ntTSL 2 BASIC12.78□□□□□ -0.36
RFC3P40938 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 FIBCD1-202ENST00000372338 3253 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
RFC3P40938 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC12.78□□□□□ -0.36
RFC3P40938 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC12.78□□□□□ -0.36
RFC3P40938 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC12.78□□□□□ -0.36
RFC3P40938 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
RFC3P40938 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
RFC3P40938 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.36
RFC3P40938 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC12.77□□□□□ -0.36
RFC3P40938 TBC1D27-202ENST00000424239 1573 ntBASIC12.77□□□□□ -0.36
RFC3P40938 CDK3-201ENST00000425876 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RFC3P40938 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RFC3P40938 AL139158.3-201ENST00000641212 1562 ntBASIC12.77□□□□□ -0.36
RFC3P40938 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RFC3P40938 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
RFC3P40938 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.36
RFC3P40938 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RFC3P40938 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RFC3P40938 CLTCL1-212ENST00000622493 1714 ntTSL 2 BASIC12.77□□□□□ -0.36
RFC3P40938 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
RFC3P40938 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
RFC3P40938 TBC1D17-201ENST00000221543 2366 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RFC3P40938 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC12.77□□□□□ -0.36
RFC3P40938 ITGB2-201ENST00000302347 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RFC3P40938 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
RFC3P40938 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC12.77□□□□□ -0.36
RFC3P40938 MED14-201ENST00000324817 7984 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RFC3P40938 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC12.77□□□□□ -0.37
RFC3P40938 ASH2L-201ENST00000343823 3090 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RFC3P40938 C16orf45-202ENST00000452191 1865 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RFC3P40938 FRMD4B-201ENST00000398540 5060 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RFC3P40938 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
RFC3P40938 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
RFC3P40938 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
RFC3P40938 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC12.77□□□□□ -0.37
RFC3P40938 AL935212.1-201ENST00000377548 906 ntTSL 5 BASIC12.77□□□□□ -0.37
RFC3P40938 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
RFC3P40938 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC12.77□□□□□ -0.37
RFC3P40938 RPL13AP19-201ENST00000434320 584 ntBASIC12.77□□□□□ -0.37
RFC3P40938 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms