Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
CIITAP33076 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
CIITAP33076 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
CIITAP33076 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CIITAP33076 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CIITAP33076 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
CIITAP33076 PRCP-201ENST00000313010 3090 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CIITAP33076 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CIITAP33076 ECI2-202ENST00000380118 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CIITAP33076 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CIITAP33076 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
CIITAP33076 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
CIITAP33076 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC15.52■□□□□ 0.08
CIITAP33076 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC15.52■□□□□ 0.08
CIITAP33076 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CIITAP33076 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CIITAP33076 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
CIITAP33076 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
CIITAP33076 IFT22-210ENST00000517481 1657 ntTSL 2 BASIC15.52■□□□□ 0.08
CIITAP33076 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CIITAP33076 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CIITAP33076 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC15.52■□□□□ 0.08
CIITAP33076 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC15.52■□□□□ 0.08
CIITAP33076 GULOP-201ENST00000454030 748 ntBASIC15.52■□□□□ 0.08
CIITAP33076 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC15.52■□□□□ 0.08
CIITAP33076 PFN2-212ENST00000490975 858 ntTSL 4 BASIC15.52■□□□□ 0.08
CIITAP33076 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC15.52■□□□□ 0.08
CIITAP33076 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC15.52■□□□□ 0.08
CIITAP33076 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC15.52■□□□□ 0.08
CIITAP33076 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC15.52■□□□□ 0.08
CIITAP33076 FOXN3-AS2-201ENST00000554071 1262 ntBASIC15.52■□□□□ 0.08
CIITAP33076 MT3-202ENST00000561640 514 ntTSL 3 BASIC15.52■□□□□ 0.08
CIITAP33076 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC15.52■□□□□ 0.08
CIITAP33076 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC15.52■□□□□ 0.08
CIITAP33076 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC15.52■□□□□ 0.08
CIITAP33076 AP001065.2-201ENST00000617205 644 ntBASIC15.52■□□□□ 0.08
CIITAP33076 SNX1-214ENST00000625244 324 ntTSL 5 BASIC15.52■□□□□ 0.08
CIITAP33076 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
CIITAP33076 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CIITAP33076 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CIITAP33076 GUCY2EP-203ENST00000531117 1918 ntBASIC15.52■□□□□ 0.07
CIITAP33076 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CIITAP33076 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CIITAP33076 TESPA1-201ENST00000316577 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
CIITAP33076 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
CIITAP33076 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
CIITAP33076 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC15.52■□□□□ 0.07
CIITAP33076 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC15.52■□□□□ 0.07
CIITAP33076 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.07
CIITAP33076 MRPL55-205ENST00000366731 1423 ntTSL 2 BASIC15.51■□□□□ 0.07
CIITAP33076 OBSL1-202ENST00000373873 3297 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC15.51■□□□□ 0.07
CIITAP33076 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC15.51■□□□□ 0.07
CIITAP33076 DDC-212ENST00000615193 1674 ntTSL 3 BASIC15.51■□□□□ 0.07
CIITAP33076 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CIITAP33076 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
CIITAP33076 PLLP-205ENST00000613167 7578 ntTSL 5 BASIC15.51■□□□□ 0.07
CIITAP33076 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
CIITAP33076 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC15.51■□□□□ 0.07
CIITAP33076 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CIITAP33076 AC108734.2-201ENST00000420887 1069 ntBASIC15.51■□□□□ 0.07
CIITAP33076 AC012362.1-201ENST00000434906 739 ntBASIC15.51■□□□□ 0.07
CIITAP33076 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC15.51■□□□□ 0.07
CIITAP33076 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 LINC00211-203ENST00000446799 662 ntTSL 3 BASIC15.51■□□□□ 0.07
CIITAP33076 LINC01485-202ENST00000520324 566 ntTSL 4 BASIC15.51■□□□□ 0.07
CIITAP33076 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 SAA2-206ENST00000530400 323 ntTSL 3 BASIC15.51■□□□□ 0.07
CIITAP33076 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC15.51■□□□□ 0.07
CIITAP33076 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 NAA38-204ENST00000575208 529 ntTSL 3 BASIC15.51■□□□□ 0.07
CIITAP33076 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC15.51■□□□□ 0.07
CIITAP33076 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC15.51■□□□□ 0.07
CIITAP33076 AL132780.4-201ENST00000624870 1135 ntBASIC15.51■□□□□ 0.07
CIITAP33076 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC15.51■□□□□ 0.07
CIITAP33076 DAB1-207ENST00000420954 1817 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 KCNIP2-203ENST00000348850 2089 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CIITAP33076 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
CIITAP33076 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC15.51■□□□□ 0.07
CIITAP33076 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC15.51■□□□□ 0.07
CIITAP33076 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
CIITAP33076 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.51■□□□□ 0.07
CIITAP33076 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
CIITAP33076 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC15.51■□□□□ 0.07
CIITAP33076 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
CIITAP33076 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC15.5■□□□□ 0.07
CIITAP33076 SNRNP27-201ENST00000244227 1802 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC15.5■□□□□ 0.07
CIITAP33076 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
CIITAP33076 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms