Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC13.79□□□□□ -0.2
COL6A2P12110 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 GNAL-203ENST00000423027 2255 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC13.79□□□□□ -0.2
COL6A2P12110 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC13.79□□□□□ -0.2
COL6A2P12110 NISCH-212ENST00000488380 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
COL6A2P12110 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 GRM4-203ENST00000455714 2574 ntTSL 2 BASIC13.78□□□□□ -0.2
COL6A2P12110 ZNF341-202ENST00000375200 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 RC3H2-205ENST00000423239 3623 ntTSL 5 BASIC13.78□□□□□ -0.2
COL6A2P12110 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC13.78□□□□□ -0.2
COL6A2P12110 USP2-201ENST00000260187 3732 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 ACTN1-204ENST00000438964 3043 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 CYFIP2-219ENST00000616178 4210 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 PCDHA11-202ENST00000616325 3418 ntAPPRIS ALT2 BASIC13.78□□□□□ -0.2
COL6A2P12110 AP3M2-207ENST00000518421 3669 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 DDX50-201ENST00000373585 2538 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC13.78□□□□□ -0.2
COL6A2P12110 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC13.78□□□□□ -0.2
COL6A2P12110 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 BTBD6P1-201ENST00000412176 1267 ntBASIC13.78□□□□□ -0.2
COL6A2P12110 FLJ37035-201ENST00000419400 446 ntTSL 3 BASIC13.78□□□□□ -0.2
COL6A2P12110 RPS9P1-201ENST00000419943 583 ntBASIC13.78□□□□□ -0.2
COL6A2P12110 ACA64.2-201ENST00000459014 129 ntBASIC13.78□□□□□ -0.2
COL6A2P12110 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.78□□□□□ -0.2
COL6A2P12110 SNX29P1-201ENST00000548357 1007 ntBASIC13.78□□□□□ -0.2
COL6A2P12110 AP005482.1-201ENST00000563722 1273 ntBASIC13.78□□□□□ -0.2
COL6A2P12110 MIR3940-201ENST00000579148 102 ntBASIC13.78□□□□□ -0.2
COL6A2P12110 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC13.78□□□□□ -0.2
COL6A2P12110 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC13.78□□□□□ -0.2
COL6A2P12110 AC010328.2-201ENST00000597698 1111 ntBASIC13.78□□□□□ -0.2
COL6A2P12110 AC091271.1-201ENST00000611877 1162 ntBASIC13.78□□□□□ -0.2
COL6A2P12110 AL157813.1-201ENST00000612996 587 ntBASIC13.78□□□□□ -0.2
COL6A2P12110 TP53-221ENST00000615910 1149 ntTSL 5 BASIC13.78□□□□□ -0.2
COL6A2P12110 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
COL6A2P12110 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC13.78□□□□□ -0.2
COL6A2P12110 AL031719.1-201ENST00000623365 2587 ntBASIC13.78□□□□□ -0.2
COL6A2P12110 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL6A2P12110 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 BIRC5-201ENST00000301633 2711 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL6A2P12110 SRPRB-201ENST00000466490 2827 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
COL6A2P12110 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 RBM25-204ENST00000526754 1567 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 IFT57-201ENST00000264538 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 BCL2-201ENST00000333681 3209 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 ARRDC5-201ENST00000381781 1638 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
COL6A2P12110 RBM4-201ENST00000310092 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 LINC00567-201ENST00000569854 3409 ntBASIC13.78□□□□□ -0.2
COL6A2P12110 CDH8-201ENST00000299345 3728 ntTSL 5 BASIC13.78□□□□□ -0.2
COL6A2P12110 SARS-202ENST00000369923 1882 ntTSL 5 BASIC13.78□□□□□ -0.2
COL6A2P12110 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 C3orf52-202ENST00000431717 2054 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
COL6A2P12110 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC13.78□□□□□ -0.2
COL6A2P12110 ZNF573-204ENST00000392138 2266 ntTSL 2 BASIC13.78□□□□□ -0.2
COL6A2P12110 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC13.78□□□□□ -0.2
COL6A2P12110 NEU3-204ENST00000531509 2468 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
COL6A2P12110 STRIP2-202ENST00000435494 2866 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
COL6A2P12110 MDM1-201ENST00000303145 2918 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL6A2P12110 PIK3R6-204ENST00000619866 3041 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
COL6A2P12110 PCDHB10-201ENST00000239446 3290 ntAPPRIS P1 BASIC13.77□□□□□ -0.2
COL6A2P12110 NINL-203ENST00000422516 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
COL6A2P12110 AC025594.2-201ENST00000609480 3902 ntAPPRIS P1 TSL 3 BASIC13.77□□□□□ -0.2
COL6A2P12110 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
COL6A2P12110 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 NIT1-202ENST00000368008 2081 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC13.77□□□□□ -0.21
COL6A2P12110 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC13.77□□□□□ -0.21
COL6A2P12110 FAM21FP-201ENST00000426241 1131 ntBASIC13.77□□□□□ -0.21
COL6A2P12110 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
COL6A2P12110 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
COL6A2P12110 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC13.77□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms