Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 LINC02538-201ENST00000609107 4569 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 IQCE-216ENST00000611775 2289 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 PPP1R2P4-201ENST00000424051 595 ntBASIC16.3■□□□□ 0.2
TRIM47Q96LD4 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 AC006529.1-201ENST00000459978 637 ntBASIC16.3■□□□□ 0.2
TRIM47Q96LD4 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 CASP3-205ENST00000517513 964 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 VENTXP3-201ENST00000546480 773 ntBASIC16.3■□□□□ 0.2
TRIM47Q96LD4 COX5A-205ENST00000568517 582 ntTSL 3 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 SNORD3B-1-201ENST00000577988 758 ntBASIC16.3■□□□□ 0.2
TRIM47Q96LD4 NT5C-204ENST00000578337 582 ntTSL 2 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 AL160191.2-201ENST00000603975 601 ntBASIC16.3■□□□□ 0.2
TRIM47Q96LD4 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
TRIM47Q96LD4 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 CSAD-203ENST00000379846 1962 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 CTNND2-202ENST00000458100 1962 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 CTBP1-AS2-206ENST00000581398 5652 ntBASIC16.29■□□□□ 0.2
TRIM47Q96LD4 OTOF-202ENST00000338581 4954 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 CD59-201ENST00000351554 1775 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 RHOG-201ENST00000351018 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 AF274858.1-201ENST00000406288 372 ntBASIC16.29■□□□□ 0.2
TRIM47Q96LD4 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 AC108471.2-201ENST00000533736 1061 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 AC145285.5-201ENST00000562217 361 ntBASIC16.29■□□□□ 0.2
TRIM47Q96LD4 AC010504.1-201ENST00000591311 585 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 AC006547.3-201ENST00000600090 583 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 SLC38A9-202ENST00000396865 2927 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 BTNL8-203ENST00000400707 1512 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 OPN5-202ENST00000371211 1801 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC16.29■□□□□ 0.2
TRIM47Q96LD4 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 EBP-205ENST00000495186 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 GABRB2-205ENST00000517901 1779 ntTSL 5 BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 DSCAM-AS1-202ENST00000427451 1640 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TRIM47Q96LD4 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms