Protein–RNA interactions for Protein: Q86X40

LRRC28, Leucine-rich repeat-containing protein 28, humanhuman

Predicted RBP Predictions only

Length 367 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28Q86X40 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
LRRC28Q86X40 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
LRRC28Q86X40 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
LRRC28Q86X40 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LRRC28Q86X40 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LRRC28Q86X40 FAM86JP-201ENST00000467239 1910 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
LRRC28Q86X40 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 SAMD4A-202ENST00000392067 6833 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 PLXNA1-201ENST00000393409 9066 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 CELF2-216ENST00000637215 2724 ntTSL 5 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 CALD1-205ENST00000422748 2665 ntTSL 2 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 COL6A3-206ENST00000409809 8916 ntTSL 5 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 GNPDA1-204ENST00000503794 2622 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 RBL1-202ENST00000373664 5684 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 BRD1-201ENST00000216267 4614 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 DAXX-213ENST00000620164 2462 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 CAPN5-201ENST00000278559 4397 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 FAM122B-203ENST00000370790 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 RAB44-202ENST00000612677 4233 ntAPPRIS P2 TSL 5 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 ARAP3-203ENST00000508305 4927 ntTSL 2 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 TUBB4AP1-201ENST00000450755 1325 ntBASIC12.48□□□□□ -0.41
LRRC28Q86X40 CDK5RAP1-203ENST00000357886 2164 ntTSL 5 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 NDUFAB1P1-201ENST00000404262 460 ntBASIC12.48□□□□□ -0.41
LRRC28Q86X40 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 HIST2H2BB-201ENST00000449108 381 ntBASIC12.48□□□□□ -0.41
LRRC28Q86X40 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 AC108725.1-201ENST00000495472 409 ntBASIC12.48□□□□□ -0.41
LRRC28Q86X40 ALG3P1-201ENST00000508806 1114 ntBASIC12.48□□□□□ -0.41
LRRC28Q86X40 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 LINC02285-201ENST00000557121 943 ntTSL 2 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 MIR4683-201ENST00000579659 81 ntBASIC12.48□□□□□ -0.41
LRRC28Q86X40 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 TRIM40-207ENST00000396581 2086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 AC027369.3-201ENST00000530465 3707 ntBASIC12.48□□□□□ -0.41
LRRC28Q86X40 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 STRA6-202ENST00000395105 2800 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 CARHSP1-217ENST00000611932 2833 ntAPPRIS P1 TSL 3 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 TGM1-201ENST00000206765 2777 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 SHC1-202ENST00000368445 3472 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 CANX-202ENST00000452673 4207 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 AC020910.5-201ENST00000623668 1865 ntBASIC12.48□□□□□ -0.41
LRRC28Q86X40 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC12.48□□□□□ -0.41
LRRC28Q86X40 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 SLC45A2-201ENST00000296589 1772 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 MEF2C-AS1-210ENST00000514011 1754 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 FLNC-202ENST00000346177 9042 ntAPPRIS ALT1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 JOSD1-201ENST00000216039 3648 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
LRRC28Q86X40 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC12.47□□□□□ -0.41
LRRC28Q86X40 AL590644.1-201ENST00000412427 4676 ntTSL 4 BASIC12.47□□□□□ -0.41
LRRC28Q86X40 NLRP2-204ENST00000391721 3420 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
LRRC28Q86X40 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 SAP30BP-225ENST00000584667 2722 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 MAPK12-203ENST00000395780 1459 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC12.47□□□□□ -0.41
LRRC28Q86X40 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 PEX1-201ENST00000248633 4385 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 ANKRD30B-202ENST00000358984 4359 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 AL021155.1-201ENST00000438808 2637 ntBASIC12.47□□□□□ -0.41
LRRC28Q86X40 DCAF6-201ENST00000312263 3186 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 CYP26B1-205ENST00000546307 4331 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 MUC20-203ENST00000436408 2463 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
LRRC28Q86X40 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 CCT3-211ENST00000472765 1858 ntTSL 2 BASIC12.47□□□□□ -0.41
LRRC28Q86X40 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 SECISBP2-201ENST00000339901 3320 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
LRRC28Q86X40 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 59.7 ms