RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PELP1Q8IZL8 1130 aaKnown RBP21.62■■□□□ 1.05
COL6A3-206ENST00000409809 MYT1Q01538 1121 aa21.56■■□□□ 1.04
COL6A3-206ENST00000409809 CCER1Q8TC90 406 aaPredicted RBP20.46■□□□□ 0.87
COL6A3-206ENST00000409809 CENPBP07199 599 aaPredicted RBP20.26■□□□□ 0.83
COL6A3-206ENST00000409809 ERICH6Q7L0X2 663 aa20.17■□□□□ 0.82
COL6A3-206ENST00000409809 ZEB1P37275 1124 aaPredicted RBP20.08■□□□□ 0.81
COL6A3-206ENST00000409809 NISCHQ9Y2I1 1504 aa20.04■□□□□ 0.8
COL6A3-206ENST00000409809 YTHDC1Q96MU7 727 aaKnown RBP19.98■□□□□ 0.79
COL6A3-206ENST00000409809 TTBK1Q5TCY1 1321 aaPredicted RBP19.88■□□□□ 0.77
COL6A3-206ENST00000409809 DCAF8L2P0C7V8 631 aa19.79■□□□□ 0.76
COL6A3-206ENST00000409809 NEFLP07196 543 aa19.58■□□□□ 0.73
COL6A3-206ENST00000409809 APLP2Q06481 763 aa19.53■□□□□ 0.72
COL6A3-206ENST00000409809 SUPT5HO00267 1087 aaKnown RBP19.48■□□□□ 0.71
COL6A3-206ENST00000409809 PCGF6Q9BYE7 350 aa19.27■□□□□ 0.67
COL6A3-206ENST00000409809 DAXXQ9UER7 740 aaPredicted RBP19.15■□□□□ 0.66
COL6A3-206ENST00000409809 FAM9AQ8IZU1 332 aaPredicted RBP19.08■□□□□ 0.65
COL6A3-206ENST00000409809 RTL5Q5HYW3 569 aaPredicted RBP19■□□□□ 0.63
COL6A3-206ENST00000409809 HRCP23327 699 aa18.84■□□□□ 0.61
COL6A3-206ENST00000409809 MYT1LQ9UL68 1186 aa18.77■□□□□ 0.59
COL6A3-206ENST00000409809 GLIPR1L2Q4G1C9 344 aa18.75■□□□□ 0.59
COL6A3-206ENST00000409809 TRIM26Q12899 539 aaPredicted RBP18.72■□□□□ 0.59
COL6A3-206ENST00000409809 SHROOM4Q9ULL8 1493 aa18.69■□□□□ 0.58
COL6A3-206ENST00000409809 CLSPNQ9HAW4 1339 aa18.68■□□□□ 0.58
COL6A3-206ENST00000409809 ZNF316A6NFI3 1004 aaPredicted RBP18.64■□□□□ 0.57
COL6A3-206ENST00000409809 EHMT2Q96KQ7 1210 aa18.47■□□□□ 0.55
COL6A3-206ENST00000409809 TRIM41Q8WV44 630 aa18.39■□□□□ 0.53
COL6A3-206ENST00000409809 DIEXFQ68CQ4 756 aaKnown RBP18.28■□□□□ 0.52
COL6A3-206ENST00000409809 CDK11AQ9UQ88 783 aaPredicted RBP18.27■□□□□ 0.51
COL6A3-206ENST00000409809 UBTFP17480 764 aaKnown RBP18.14■□□□□ 0.49
COL6A3-206ENST00000409809 ANP32AP39687 249 aaKnown RBP18.14■□□□□ 0.49
COL6A3-206ENST00000409809 ANP32BQ92688 251 aaKnown RBP18.12■□□□□ 0.49
COL6A3-206ENST00000409809 GTF3C3Q9Y5Q9 886 aa18.09■□□□□ 0.49
COL6A3-206ENST00000409809 ACIN1Q9UKV3 1341 aaKnown RBP17.98■□□□□ 0.47
COL6A3-206ENST00000409809 EIF5BO60841 1220 aaKnown RBP17.97■□□□□ 0.47
COL6A3-206ENST00000409809 TNNT2P45379 298 aaPredicted RBP17.85■□□□□ 0.45
COL6A3-206ENST00000409809 ANP32CO43423 234 aa17.82■□□□□ 0.44
COL6A3-206ENST00000409809 ZBTB47Q9UFB7 747 aaPredicted RBP17.8■□□□□ 0.44
COL6A3-206ENST00000409809 ATP1B4Q9UN42 357 aaPredicted RBP17.79■□□□□ 0.44
COL6A3-206ENST00000409809 ANP32EQ9BTT0 268 aa17.78■□□□□ 0.44
COL6A3-206ENST00000409809 UPF2Q9HAU5 1272 aaKnown RBP17.7■□□□□ 0.42
COL6A3-206ENST00000409809 NCLP19338 710 aaKnown RBP17.67■□□□□ 0.42
COL6A3-206ENST00000409809 TRIM44Q96DX7 344 aaPredicted RBP17.66■□□□□ 0.42
COL6A3-206ENST00000409809 RANGAP1P46060 587 aaPredicted RBP17.64■□□□□ 0.41
COL6A3-206ENST00000409809 PPARGC1BQ86YN6 1023 aaKnown RBP17.61■□□□□ 0.41
COL6A3-206ENST00000409809 NEFMP07197 916 aa17.58■□□□□ 0.4
COL6A3-206ENST00000409809 POLR3GLQ9BT43 218 aa17.56■□□□□ 0.4
COL6A3-206ENST00000409809 ERICH6BQ5W0A0 696 aa17.56■□□□□ 0.4
COL6A3-206ENST00000409809 BCANQ96GW7 911 aa17.53■□□□□ 0.4
COL6A3-206ENST00000409809 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.52■□□□□ 0.39
COL6A3-206ENST00000409809 HSP90AA1P07900 732 aaKnown RBP17.52■□□□□ 0.39
COL6A3-206ENST00000409809 DCAF1Q9Y4B6 1507 aa17.51■□□□□ 0.39
COL6A3-206ENST00000409809 CHIC1Q5VXU3 224 aa17.49■□□□□ 0.39
COL6A3-206ENST00000409809 CANXP27824 592 aaKnown RBP17.49■□□□□ 0.39
COL6A3-206ENST00000409809 HNRNPUL2Q1KMD3 747 aaKnown RBP17.48■□□□□ 0.39
COL6A3-206ENST00000409809 DDRGK1Q96HY6 314 aa17.47■□□□□ 0.39
COL6A3-206ENST00000409809 CDK11BP21127 795 aaKnown RBP17.42■□□□□ 0.38
COL6A3-206ENST00000409809 CCDC180Q9P1Z9 1646 aa17.38■□□□□ 0.37
COL6A3-206ENST00000409809 BECN1Q14457 450 aa17.36■□□□□ 0.37
COL6A3-206ENST00000409809 ITGAEP38570 1179 aa17.35■□□□□ 0.37
COL6A3-206ENST00000409809 FKBP8Q14318 412 aa17.3■□□□□ 0.36
COL6A3-206ENST00000409809 PPM1GO15355 546 aaPredicted RBP17.29■□□□□ 0.36
COL6A3-206ENST00000409809 GOLGA6L22H0YM25 854 aa17.29■□□□□ 0.36
COL6A3-206ENST00000409809 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.28■□□□□ 0.36
COL6A3-206ENST00000409809 NPM2Q86SE8 214 aaKnown RBP17.28■□□□□ 0.36
COL6A3-206ENST00000409809 NBR1Q14596 966 aa17.25■□□□□ 0.35
COL6A3-206ENST00000409809 LOC105371045A0A1W2PR82 267 aa17.22■□□□□ 0.35
COL6A3-206ENST00000409809 CCDC136Q96JN2 1154 aa17.22■□□□□ 0.35
COL6A3-206ENST00000409809 SLC4A1APQ9BWU0 796 aaKnown RBP17.21■□□□□ 0.35
COL6A3-206ENST00000409809 BCL11AQ9H165 835 aa17.2■□□□□ 0.34
COL6A3-206ENST00000409809 SCAF1Q9H7N4 1312 aaKnown RBP17.19■□□□□ 0.34
COL6A3-206ENST00000409809 ARID4BQ4LE39 1312 aaPredicted RBP17.1■□□□□ 0.33
COL6A3-206ENST00000409809 FAM50AQ14320 339 aaKnown RBP17.1■□□□□ 0.33
COL6A3-206ENST00000409809 NEUROD1Q13562 356 aa17.09■□□□□ 0.33
COL6A3-206ENST00000409809 CHAF1AQ13111 956 aaPredicted RBP17.08■□□□□ 0.33
COL6A3-206ENST00000409809 L1TD1Q5T7N2 865 aaKnown RBP17.08■□□□□ 0.33
COL6A3-206ENST00000409809 NAP1L5Q96NT1 182 aaPredicted RBP17.08■□□□□ 0.32
COL6A3-206ENST00000409809 CNGB1Q14028 1251 aaPredicted RBP17.06■□□□□ 0.32
COL6A3-206ENST00000409809 HNRNPUQ00839 825 aaKnown RBP eCLIP17.06■□□□□ 0.32
COL6A3-206ENST00000409809 TRIM52Q96A61 297 aa17.05■□□□□ 0.32
COL6A3-206ENST00000409809 GOLGA6L6A8MZA4 724 aa17.03■□□□□ 0.32
COL6A3-206ENST00000409809 TONSLQ96HA7 1378 aa17.03■□□□□ 0.32
COL6A3-206ENST00000409809 NRDCO43847 1150 aa17.03■□□□□ 0.32
COL6A3-206ENST00000409809 PTMSP20962 102 aa17■□□□□ 0.31
COL6A3-206ENST00000409809 NOP58Q9Y2X3 529 aaKnown RBP16.99■□□□□ 0.31
COL6A3-206ENST00000409809 PTMAP06454 111 aaKnown RBP16.98■□□□□ 0.31
COL6A3-206ENST00000409809 DNTTIP2Q5QJE6 756 aaKnown RBP16.98■□□□□ 0.31
COL6A3-206ENST00000409809 MYH16Q9H6N6 1097 aa16.97■□□□□ 0.31
COL6A3-206ENST00000409809 ZRSR1Q15695 479 aaKnown RBP16.92■□□□□ 0.3
COL6A3-206ENST00000409809 MSNP26038 577 aaKnown RBP16.9■□□□□ 0.3
COL6A3-206ENST00000409809 RSPH6AQ9H0K4 717 aa16.88■□□□□ 0.29
COL6A3-206ENST00000409809 CASC1Q6TDU7 716 aa16.87■□□□□ 0.29
COL6A3-206ENST00000409809 ZNF326Q5BKZ1 582 aaKnown RBP16.87■□□□□ 0.29
COL6A3-206ENST00000409809 USP35Q9P2H5 1018 aa16.86■□□□□ 0.29
COL6A3-206ENST00000409809 TMC1Q8TDI8 760 aa16.84■□□□□ 0.29
COL6A3-206ENST00000409809 CFAP44Q96MT7 982 aa16.83■□□□□ 0.28
COL6A3-206ENST00000409809 ARXQ96QS3 562 aa16.81■□□□□ 0.28
COL6A3-206ENST00000409809 DEKP35659 375 aaKnown RBP16.8■□□□□ 0.28
COL6A3-206ENST00000409809 CHMP4BQ9H444 224 aaKnown RBP16.79■□□□□ 0.28
COL6A3-206ENST00000409809 PPP4R2Q9NY27 417 aa16.79■□□□□ 0.28
COL6A3-206ENST00000409809 TNNT3P45378 269 aaPredicted RBP16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 120 ms