Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PACRG-AS3-203ENST00000614038 1246 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 AC121247.1-201ENST00000622888 1232 ntBASIC13.85□□□□□ -0.19
VCANP13611 ERGIC3-220ENST00000640748 832 ntTSL 5 BASIC13.85□□□□□ -0.19
VCANP13611 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
VCANP13611 MIER1-202ENST00000355977 3595 ntTSL 5 BASIC13.85□□□□□ -0.19
VCANP13611 AGAP7P-201ENST00000582299 2062 ntBASIC13.84□□□□□ -0.19
VCANP13611 AGAP14-201ENST00000624701 2060 ntBASIC13.84□□□□□ -0.19
VCANP13611 HP-203ENST00000357763 1482 ntTSL 5 BASIC13.84□□□□□ -0.19
VCANP13611 SKAP1-208ENST00000584924 1477 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
VCANP13611 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
VCANP13611 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 LYRM7-203ENST00000510516 604 ntTSL 2 BASIC13.84□□□□□ -0.19
VCANP13611 AC005586.2-201ENST00000563946 837 ntBASIC13.84□□□□□ -0.19
VCANP13611 AC140658.2-201ENST00000566360 348 ntBASIC13.84□□□□□ -0.19
VCANP13611 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC13.84□□□□□ -0.19
VCANP13611 RN7SK-201ENST00000636484 328 ntBASIC13.84□□□□□ -0.19
VCANP13611 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 PKD1P6-201ENST00000343738 4769 ntBASIC13.84□□□□□ -0.19
VCANP13611 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.84□□□□□ -0.19
VCANP13611 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC13.84□□□□□ -0.19
VCANP13611 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC13.84□□□□□ -0.19
VCANP13611 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
VCANP13611 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 TXNDC9-205ENST00000434323 733 ntTSL 5 BASIC13.84□□□□□ -0.19
VCANP13611 ZBED3-AS1-206ENST00000508401 582 ntTSL 2 BASIC13.84□□□□□ -0.19
VCANP13611 AC092368.1-201ENST00000568014 733 ntBASIC13.84□□□□□ -0.19
VCANP13611 PSMD7-205ENST00000568615 931 ntTSL 2 BASIC13.84□□□□□ -0.19
VCANP13611 ABHD11-AS1-202ENST00000641969 358 ntBASIC13.84□□□□□ -0.19
VCANP13611 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 HPGD-204ENST00000504433 1910 ntTSL 2 BASIC13.84□□□□□ -0.19
VCANP13611 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 CICP24-201ENST00000605464 2705 ntBASIC13.84□□□□□ -0.19
VCANP13611 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
VCANP13611 TRNT1-202ENST00000280591 2180 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC13.84□□□□□ -0.19
VCANP13611 SERPINI1-202ENST00000446050 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
VCANP13611 AL356585.2-201ENST00000625078 2396 ntBASIC13.84□□□□□ -0.19
VCANP13611 AL354702.1-201ENST00000442006 1960 ntBASIC13.84□□□□□ -0.19
VCANP13611 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
VCANP13611 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.83□□□□□ -0.19
VCANP13611 TMPRSS13-201ENST00000430170 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
VCANP13611 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
VCANP13611 LYPD4-201ENST00000343055 1051 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
VCANP13611 CLDN10-AS1-201ENST00000416909 895 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
VCANP13611 AC006967.2-201ENST00000426169 432 ntTSL 3 BASIC13.83□□□□□ -0.19
VCANP13611 AP000343.1-201ENST00000440602 385 ntBASIC13.83□□□□□ -0.19
VCANP13611 NDUFC1-206ENST00000505036 809 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
VCANP13611 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.19
VCANP13611 SIGLEC17P-201ENST00000593736 484 ntBASIC13.83□□□□□ -0.19
VCANP13611 LYPD4-202ENST00000601246 1076 ntTSL 5 BASIC13.83□□□□□ -0.19
VCANP13611 AC022392.1-201ENST00000609403 744 ntBASIC13.83□□□□□ -0.19
VCANP13611 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.19
VCANP13611 KRT8P42-201ENST00000405771 1399 ntBASIC13.83□□□□□ -0.19
VCANP13611 BSDC1-209ENST00000526031 1361 ntTSL 2 BASIC13.83□□□□□ -0.19
VCANP13611 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.83□□□□□ -0.19
VCANP13611 GAS6-AS2-201ENST00000608651 1952 ntTSL 2 BASIC13.83□□□□□ -0.2
VCANP13611 FMR1-218ENST00000621447 1832 ntTSL 3 BASIC13.83□□□□□ -0.2
VCANP13611 ATP6V0D1-218ENST00000602876 1554 ntTSL 5 BASIC13.83□□□□□ -0.2
VCANP13611 FKBP4P1-201ENST00000507284 1347 ntBASIC13.83□□□□□ -0.2
VCANP13611 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 ABLIM2-209ENST00000505872 1680 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
VCANP13611 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.83□□□□□ -0.2
VCANP13611 ADAM19-203ENST00000517905 3312 ntTSL 5 BASIC13.83□□□□□ -0.2
VCANP13611 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
VCANP13611 MYL7-201ENST00000223364 612 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 SCGB1C1-201ENST00000342878 431 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 HIST1H2BN-201ENST00000396980 432 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
VCANP13611 LINC02151-201ENST00000452629 921 ntTSL 2 BASIC13.83□□□□□ -0.2
VCANP13611 FAM83A-AS1-201ENST00000517519 1158 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 AC090095.1-201ENST00000519275 871 ntBASIC13.83□□□□□ -0.2
VCANP13611 CCDC42-202ENST00000539522 1087 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 LINC00929-202ENST00000556159 1169 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 PAX6-255ENST00000639386 1723 ntTSL 5 BASIC13.83□□□□□ -0.2
VCANP13611 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC13.83□□□□□ -0.2
VCANP13611 SCARB2-202ENST00000452464 1495 ntTSL 2 BASIC13.83□□□□□ -0.2
VCANP13611 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC13.83□□□□□ -0.2
VCANP13611 ERCC4-207ENST00000575156 2073 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 CSMD2-202ENST00000338325 1544 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC13.83□□□□□ -0.2
VCANP13611 EXOC7-206ENST00000406660 718 ntTSL 2 BASIC13.83□□□□□ -0.2
VCANP13611 TMEM176A-201ENST00000004103 1261 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 LINC00424-201ENST00000413124 654 ntTSL 4 BASIC13.83□□□□□ -0.2
VCANP13611 AC087441.1-201ENST00000531069 301 ntBASIC13.83□□□□□ -0.2
VCANP13611 TMEM253-206ENST00000556585 1236 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
VCANP13611 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 AC020663.2-201ENST00000592465 720 ntTSL 3 BASIC13.83□□□□□ -0.2
VCANP13611 KLHDC2-211ENST00000557247 1565 ntTSL 5 BASIC13.83□□□□□ -0.2
VCANP13611 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
VCANP13611 KDM1B-201ENST00000297792 3811 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
VCANP13611 TEX101-203ENST00000602198 1446 ntAPPRIS P3 TSL 5 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms