Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 C17orf82-201ENST00000623772 1530 ntBASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
RPH3AQ9Y2J0 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
RPH3AQ9Y2J0 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
RPH3AQ9Y2J0 AC096631.2-201ENST00000436136 790 ntBASIC20.4■□□□□ 0.86
RPH3AQ9Y2J0 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.4■□□□□ 0.86
RPH3AQ9Y2J0 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
RPH3AQ9Y2J0 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
RPH3AQ9Y2J0 AC099791.2-201ENST00000605725 427 ntBASIC20.4■□□□□ 0.86
RPH3AQ9Y2J0 AC005837.3-201ENST00000612163 286 ntBASIC20.4■□□□□ 0.86
RPH3AQ9Y2J0 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
RPH3AQ9Y2J0 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RPH3AQ9Y2J0 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
RPH3AQ9Y2J0 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
RPH3AQ9Y2J0 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RPH3AQ9Y2J0 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
RPH3AQ9Y2J0 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.39■□□□□ 0.85
RPH3AQ9Y2J0 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RPH3AQ9Y2J0 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RPH3AQ9Y2J0 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
RPH3AQ9Y2J0 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.39■□□□□ 0.85
RPH3AQ9Y2J0 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
RPH3AQ9Y2J0 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
RPH3AQ9Y2J0 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC20.39■□□□□ 0.85
RPH3AQ9Y2J0 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC20.39■□□□□ 0.85
RPH3AQ9Y2J0 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RPH3AQ9Y2J0 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC20.38■□□□□ 0.85
RPH3AQ9Y2J0 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RPH3AQ9Y2J0 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
RPH3AQ9Y2J0 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
RPH3AQ9Y2J0 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 AC110285.6-201ENST00000617652 491 ntBASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC20.37■□□□□ 0.85
RPH3AQ9Y2J0 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPH3AQ9Y2J0 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
RPH3AQ9Y2J0 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
RPH3AQ9Y2J0 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPH3AQ9Y2J0 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPH3AQ9Y2J0 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
RPH3AQ9Y2J0 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.36■□□□□ 0.85
RPH3AQ9Y2J0 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPH3AQ9Y2J0 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPH3AQ9Y2J0 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC20.36■□□□□ 0.85
RPH3AQ9Y2J0 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
RPH3AQ9Y2J0 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPH3AQ9Y2J0 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RPH3AQ9Y2J0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPH3AQ9Y2J0 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.35■□□□□ 0.85
RPH3AQ9Y2J0 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.35■□□□□ 0.85
RPH3AQ9Y2J0 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
RPH3AQ9Y2J0 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC20.35■□□□□ 0.85
RPH3AQ9Y2J0 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
RPH3AQ9Y2J0 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.34■□□□□ 0.85
RPH3AQ9Y2J0 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPH3AQ9Y2J0 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
RPH3AQ9Y2J0 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
RPH3AQ9Y2J0 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RPH3AQ9Y2J0 UNC93B3-201ENST00000308076 687 ntBASIC20.34■□□□□ 0.85
RPH3AQ9Y2J0 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
RPH3AQ9Y2J0 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms