Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.154e-6■■■■□ 22.2
LSM11P83369 PDCD6-203ENST00000505526 1484 ntTSL 1 (best)14.04□□□□□ -0.164e-6■■■■□ 22.2
LSM11P83369 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.194e-6■■■■□ 22.2
LSM11P83369 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC13.72□□□□□ -0.214e-6■■■■□ 22.2
LSM11P83369 GLI4-203ENST00000517468 963 ntTSL 5 BASIC13.66□□□□□ -0.224e-6■■■■□ 22.2
LSM11P83369 NAPRT-211ENST00000498076 448 ntTSL 213.63□□□□□ -0.234e-6■■■■□ 22.2
LSM11P83369 ABCA7-201ENST00000263094 6816 ntAPPRIS P2 TSL 5 BASIC13.21□□□□□ -0.294e-7■■■■□ 22.2
LSM11P83369 NAPRT-205ENST00000460623 694 ntTSL 313.15□□□□□ -0.34e-6■■■■□ 22.2
LSM11P83369 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.324e-7■■■■□ 22.2
LSM11P83369 PILRB-203ENST00000431140 772 ntTSL 312.55□□□□□ -0.41e-7■■■■□ 22.2
LSM11P83369 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.414e-7■■■■□ 22.2
LSM11P83369 PILRB-211ENST00000493091 4345 ntTSL 212.39□□□□□ -0.431e-9■■■■□ 22.2
LSM11P83369 PILRB-209ENST00000455145 902 ntTSL 512.31□□□□□ -0.441e-9■■■■□ 22.2
LSM11P83369 LRRC41-206ENST00000615587 2842 ntTSL 1 (best) BASIC12.29□□□□□ -0.444e-6■■■■□ 22.2
LSM11P83369 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.494e-6■■■■□ 22.2
LSM11P83369 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC12□□□□□ -0.494e-6■■■■□ 22.2
LSM11P83369 ACCS-213ENST00000534035 532 ntTSL 311.94□□□□□ -0.54e-6■■■■□ 22.2
LSM11P83369 PDCD6-204ENST00000506909 458 ntTSL 311.86□□□□□ -0.514e-6■■■■□ 22.2
LSM11P83369 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.524e-7■■■■□ 22.2
LSM11P83369 VARS2-205ENST00000469358 3429 ntTSL 511.58□□□□□ -0.562e-6■■■■□ 22.2
LSM11P83369 ACCS-201ENST00000263776 2362 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.594e-6■■■■□ 22.2
LSM11P83369 NADSYN1-206ENST00000525593 928 ntTSL 511.3□□□□□ -0.61e-6■■■■□ 22.2
LSM11P83369 LRRC41-207ENST00000617190 4128 ntAPPRIS P1 TSL 1 (best) BASIC10.85□□□□□ -0.674e-6■■■■□ 22.2
LSM11P83369 COQ4-203ENST00000461102 3127 ntTSL 210.8□□□□□ -0.684e-7■■■■□ 22.2
LSM11P83369 VARS2-213ENST00000625423 3362 ntTSL 2 BASIC10.66□□□□□ -0.72e-6■■■■□ 22.2
LSM11P83369 PDCD6-210ENST00000513582 3500 ntTSL 210.48□□□□□ -0.734e-6■■■■□ 22.2
LSM11P83369 STAG3L5P-PVRIG2P-PILRB-204ENST00000472646 553 ntTSL 510.12□□□□□ -0.791e-7■■■■□ 22.2
LSM11P83369 GLI4-206ENST00000520021 361 ntTSL 310.03□□□□□ -0.84e-6■■■■□ 22.2
LSM11P83369 NADSYN1-211ENST00000527963 479 ntTSL 410□□□□□ -0.811e-6■■■■□ 22.2
LSM11P83369 ACCS-204ENST00000527346 3373 ntTSL 28.11□□□□□ -1.114e-6■■■■□ 22.2
LSM11P83369 PDCD6-205ENST00000507473 486 ntTSL 37.17□□□□□ -1.264e-6■■■■□ 22.2
LSM11P83369 GSE1-216ENST00000637419 2683 ntTSL 519.02■□□□□ 0.647e-7■■■■□ 22.1
LSM11P83369 SRSF7-206ENST00000431066 1847 ntTSL 511.37□□□□□ -0.596e-7■■■■□ 22.1
LSM11P83369 SRSF7-208ENST00000443213 1903 ntTSL 511.23□□□□□ -0.616e-7■■■■□ 22.1
LSM11P83369 SRSF7-201ENST00000313117 2489 ntAPPRIS P1 TSL 1 (best) BASIC10.44□□□□□ -0.746e-7■■■■□ 22.1
LSM11P83369 SRSF7-209ENST00000446327 2453 ntTSL 2 BASIC9.6□□□□□ -0.876e-7■■■■□ 22.1
LSM11P83369 SRSF7-205ENST00000425941 1944 ntTSL 59.15□□□□□ -0.956e-7■■■■□ 22.1
LSM11P83369 SRSF7-202ENST00000409276 1050 ntTSL 5 BASIC8.88□□□□□ -0.996e-7■■■■□ 22.1
LSM11P83369 SRSF7-204ENST00000425778 2857 ntTSL 28.24□□□□□ -1.096e-7■■■■□ 22.1
LSM11P83369 TBX2-AS1-206ENST00000592377 410 ntTSL 214.44□□□□□ -0.12e-6■■■■□ 22.1
LSM11P83369 LPIN3-205ENST00000632009 4132 ntAPPRIS P2 TSL 1 (best) BASIC9.56□□□□□ -0.881e-9■■■■□ 22.1
LSM11P83369 ERF-203ENST00000593944 555 ntTSL 416.17■□□□□ 0.183e-6■■■■□ 22
LSM11P83369 ERF-205ENST00000595941 227 ntTSL 47.45□□□□□ -1.223e-6■■■■□ 22
LSM11P83369 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.292e-6■■■■□ 22
LSM11P83369 PPP6R2-209ENST00000612753 4104 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.522e-6■■■■□ 22
LSM11P83369 PPP6R2-206ENST00000427222 1811 ntTSL 516.64■□□□□ 0.252e-6■■■■□ 22
LSM11P83369 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.252e-6■■■■□ 22
LSM11P83369 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.272e-6■■■■□ 22
LSM11P83369 PPP6R2-205ENST00000401672 2199 ntTSL 212.64□□□□□ -0.392e-6■■■■□ 22
LSM11P83369 PPP6R2-201ENST00000216061 3415 ntAPPRIS ALT2 TSL 1 (best) BASIC11.28□□□□□ -0.62e-6■■■■□ 22
LSM11P83369 CBFA2T3-207ENST00000564416 399 ntTSL 513.23□□□□□ -0.299e-7■■■■□ 22
LSM11P83369 UBE2J2-208ENST00000450390 2455 ntTSL 520.64■□□□□ 0.891e-6■■■■□ 22
LSM11P83369 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.85■□□□□ 0.771e-6■■■■□ 22
LSM11P83369 FUS-212ENST00000569760 639 ntTSL 220.33■□□□□ 0.851e-12■■■■□ 21.9
LSM11P83369 FUS-204ENST00000483853 778 ntTSL 218.44■□□□□ 0.541e-12■■■■□ 21.9
LSM11P83369 RCCD1-205ENST00000556333 735 ntTSL 1 (best)17.87■□□□□ 0.451e-6■■■■□ 21.8
LSM11P83369 PTBP2-209ENST00000482253 2029 ntTSL 217.38■□□□□ 0.371e-6■■■■□ 21.8
LSM11P83369 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC17.21■□□□□ 0.351e-6■■■■□ 21.8
LSM11P83369 BGLAP-202ENST00000471413 931 ntTSL 515.46■□□□□ 0.071e-6■■■■□ 21.8
LSM11P83369 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.011e-6■■■■□ 21.8
LSM11P83369 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC14.75□□□□□ -0.051e-6■■■■□ 21.8
LSM11P83369 AC012321.1-201ENST00000561622 1588 ntBASIC13.7□□□□□ -0.221e-6■■■■□ 21.8
LSM11P83369 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC11.93□□□□□ -0.51e-6■■■■□ 21.8
LSM11P83369 NPIPB4-202ENST00000341400 767 ntTSL 211.21□□□□□ -0.611e-6■■■■□ 21.8
LSM11P83369 PMF1-BGLAP-201ENST00000320139 773 ntTSL 1 (best) BASIC11.05□□□□□ -0.641e-6■■■■□ 21.8
LSM11P83369 SMO-203ENST00000475779 582 ntTSL 310.48□□□□□ -0.731e-6■■■■□ 21.8
LSM11P83369 NPIPB4-222ENST00000614197 1216 ntTSL 5 BASIC9.51□□□□□ -0.891e-6■■■■□ 21.8
LSM11P83369 PTBP2-207ENST00000476419 1691 ntTSL 1 (best)9.37□□□□□ -0.911e-6■■■■□ 21.8
LSM11P83369 PTBP2-204ENST00000459735 791 ntTSL 59.27□□□□□ -0.931e-6■■■■□ 21.8
LSM11P83369 NPIPB4-215ENST00000542133 910 ntTSL 39.06□□□□□ -0.961e-6■■■■□ 21.8
LSM11P83369 GABRE-205ENST00000465405 706 ntTSL 1 (best)8.74□□□□□ -1.011e-6■■■■□ 21.8
LSM11P83369 GABRE-206ENST00000474932 430 ntTSL 58.23□□□□□ -1.091e-6■■■■□ 21.8
LSM11P83369 PTBP2-201ENST00000370197 3057 ntAPPRIS ALT1 TSL 1 (best) BASIC8.1□□□□□ -1.111e-6■■■■□ 21.8
LSM11P83369 NPIPB4-211ENST00000539318 695 ntTSL 57.98□□□□□ -1.131e-6■■■■□ 21.8
LSM11P83369 GABRE-203ENST00000441219 1324 ntTSL 27.93□□□□□ -1.141e-6■■■■□ 21.8
LSM11P83369 PTBP2-208ENST00000476783 779 ntTSL 1 (best)7.9□□□□□ -1.141e-6■■■■□ 21.8
LSM11P83369 PTBP2-202ENST00000370198 3054 ntAPPRIS ALT1 TSL 1 (best) BASIC7.85□□□□□ -1.151e-6■■■■□ 21.8
LSM11P83369 NPIPB4-204ENST00000518761 576 ntTSL 37.58□□□□□ -1.21e-6■■■■□ 21.8
LSM11P83369 PTBP2-210ENST00000492905 776 ntTSL 1 (best)7.46□□□□□ -1.221e-6■■■■□ 21.8
LSM11P83369 PTBP2-203ENST00000426398 3027 ntAPPRIS P3 TSL 1 (best) BASIC7.27□□□□□ -1.251e-6■■■■□ 21.8
LSM11P83369 NFAT5-204ENST00000426654 14219 ntTSL 1 (best)7□□□□□ -1.291e-6■■■■□ 21.8
LSM11P83369 NPIPB4-213ENST00000541329 432 ntTSL 56.97□□□□□ -1.291e-6■■■■□ 21.8
LSM11P83369 NPIPB4-203ENST00000415645 3606 ntAPPRIS P1 TSL 5 BASIC6.93□□□□□ -1.31e-6■■■■□ 21.8
LSM11P83369 NFAT5-201ENST00000349945 13362 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.341e-6■■■■□ 21.8
LSM11P83369 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6.48□□□□□ -1.371e-6■■■■□ 21.8
LSM11P83369 AP002807.1-201ENST00000529934 326 ntTSL 55.77□□□□□ -1.491e-6■■■■□ 21.8
LSM11P83369 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.76□□□□□ -1.811e-6■■■■□ 21.8
LSM11P83369 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.07□□□□□ -1.921e-6■■■■□ 21.8
LSM11P83369 RHEB-203ENST00000470370 501 ntTSL 511.16□□□□□ -0.622e-12■■■■□ 21.8
LSM11P83369 GSE1-203ENST00000405402 4366 ntAPPRIS ALT2 TSL 1 (best) BASIC12.77□□□□□ -0.377e-7■■■■□ 21.8
LSM11P83369 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC14.7□□□□□ -0.065e-7■■■■□ 21.8
LSM11P83369 FUS-209ENST00000566605 1787 ntTSL 1 (best)23.99■■□□□ 1.433e-11■■■■□ 21.7
LSM11P83369 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.23e-11■■■■□ 21.7
LSM11P83369 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.793e-11■■■■□ 21.7
LSM11P83369 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.23e-11■■■■□ 21.7
LSM11P83369 FUS-206ENST00000487509 4920 ntTSL 212.24□□□□□ -0.453e-11■■■■□ 21.7
LSM11P83369 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.16■□□□□ 0.663e-11■■■■□ 21.7
LSM11P83369 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.65■□□□□ 0.13e-11■■■■□ 21.7
LSM11P83369 TPM1-214ENST00000558544 1399 ntTSL 515.55■□□□□ 0.083e-11■■■■□ 21.7
LSM11P83369 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.08■□□□□ 03e-11■■■■□ 21.7
Retrieved 100 of 11,495 protein–RNA pairs in 62.3 ms