RNA–Protein interactions for RNA: ENST00000541329.1

NPIPB4-213, Transcript of nuclear pore complex interacting protein family member B4, humanhuman

TSL 5

Gene NPIPB4, Length 432 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB4-213ENST00000541329 NISCHQ9Y2I1 1504 aa17.09■□□□□ 0.33
NPIPB4-213ENST00000541329 CCDC180Q9P1Z9 1646 aa14.95□□□□□ -0.02
NPIPB4-213ENST00000541329 AEBP2Q6ZN18 517 aaPredicted RBP14.59□□□□□ -0.07
NPIPB4-213ENST00000541329 ABCC9O60706 1549 aa14.55□□□□□ -0.08
NPIPB4-213ENST00000541329 DNAJC5BQ9UF47 199 aa14.51□□□□□ -0.09
NPIPB4-213ENST00000541329 ZCCHC6Q5VYS8 1495 aaKnown RBP14.34□□□□□ -0.11
NPIPB4-213ENST00000541329 DCAF8L2P0C7V8 631 aa14.21□□□□□ -0.13
NPIPB4-213ENST00000541329 DCAF1Q9Y4B6 1507 aa14.07□□□□□ -0.16
NPIPB4-213ENST00000541329 SHROOM4Q9ULL8 1493 aa14.06□□□□□ -0.16
NPIPB4-213ENST00000541329 DNAJC5Q9H3Z4 198 aa14.05□□□□□ -0.16
NPIPB4-213ENST00000541329 NACADO15069 1562 aa13.88□□□□□ -0.19
NPIPB4-213ENST00000541329 MYO15BQ96JP2 1530 aa13.87□□□□□ -0.19
NPIPB4-213ENST00000541329 CHIC1Q5VXU3 224 aa13.87□□□□□ -0.19
NPIPB4-213ENST00000541329 SCRIBQ14160 1630 aa13.82□□□□□ -0.2
NPIPB4-213ENST00000541329 RB1CC1Q8TDY2 1594 aa13.79□□□□□ -0.2
NPIPB4-213ENST00000541329 UNC13AQ9UPW8 1703 aa13.63□□□□□ -0.23
NPIPB4-213ENST00000541329 SUPT5HO00267 1087 aaKnown RBP13.49□□□□□ -0.25
NPIPB4-213ENST00000541329 PABPN1Q86U42 306 aaKnown RBP eCLIP13.39□□□□□ -0.27
NPIPB4-213ENST00000541329 BICRAQ9NZM4 1560 aa13.38□□□□□ -0.27
NPIPB4-213ENST00000541329 CECR2Q9BXF3 1484 aa13.31□□□□□ -0.28
NPIPB4-213ENST00000541329 RSF1Q96T23 1441 aaPredicted RBP13.24□□□□□ -0.29
NPIPB4-213ENST00000541329 MROH2BQ7Z745 1585 aa13.24□□□□□ -0.29
NPIPB4-213ENST00000541329 BAZ1AQ9NRL2 1556 aaPredicted RBP13.2□□□□□ -0.3
NPIPB4-213ENST00000541329 WIZO95785 1651 aa13.19□□□□□ -0.3
NPIPB4-213ENST00000541329 SMARCA4P51532 1647 aa13.19□□□□□ -0.3
NPIPB4-213ENST00000541329 CC2D2AQ9P2K1 1620 aa13.1□□□□□ -0.31
NPIPB4-213ENST00000541329 TRIM41Q8WV44 630 aa12.99□□□□□ -0.33
NPIPB4-213ENST00000541329 TOP2AP11388 1531 aaKnown RBP12.98□□□□□ -0.33
NPIPB4-213ENST00000541329 CUX2O14529 1486 aa12.98□□□□□ -0.33
NPIPB4-213ENST00000541329 EIF4G1Q04637 1599 aaKnown RBP12.98□□□□□ -0.33
NPIPB4-213ENST00000541329 PEG3Q9GZU2 1588 aa12.94□□□□□ -0.34
NPIPB4-213ENST00000541329 SMARCA2P51531 1590 aa12.92□□□□□ -0.34
NPIPB4-213ENST00000541329 ATAD2BQ9ULI0 1458 aa12.91□□□□□ -0.34
NPIPB4-213ENST00000541329 BAZ1BQ9UIG0 1483 aaKnown RBP12.88□□□□□ -0.35
NPIPB4-213ENST00000541329 CCDC88BA6NC98 1476 aa12.85□□□□□ -0.35
NPIPB4-213ENST00000541329 HMGXB3Q12766 1538 aa12.78□□□□□ -0.36
NPIPB4-213ENST00000541329 NCAPD3P42695 1498 aa12.76□□□□□ -0.37
NPIPB4-213ENST00000541329 ERCC6Q03468 1493 aa12.65□□□□□ -0.38
NPIPB4-213ENST00000541329 ABCC8Q09428 1581 aa12.64□□□□□ -0.39
NPIPB4-213ENST00000541329 PRDM2Q13029 1718 aa12.58□□□□□ -0.4
NPIPB4-213ENST00000541329 CFTRP13569 1480 aa12.5□□□□□ -0.41
NPIPB4-213ENST00000541329 SYNJ1O43426 1573 aa12.49□□□□□ -0.41
NPIPB4-213ENST00000541329 FAM9AQ8IZU1 332 aaPredicted RBP12.48□□□□□ -0.41
NPIPB4-213ENST00000541329 WRNQ14191 1432 aaPredicted RBP eCLIP12.47□□□□□ -0.41
NPIPB4-213ENST00000541329 CADPSQ9ULU8 1353 aa12.45□□□□□ -0.42
NPIPB4-213ENST00000541329 NESP48681 1621 aa12.44□□□□□ -0.42
NPIPB4-213ENST00000541329 BIVM-ERCC5R4GMW8 1640 aa12.42□□□□□ -0.42
NPIPB4-213ENST00000541329 LOC105371045A0A1W2PR82 267 aa12.41□□□□□ -0.42
NPIPB4-213ENST00000541329 TOP2BQ02880 1626 aa12.4□□□□□ -0.42
NPIPB4-213ENST00000541329 LAMC3Q9Y6N6 1575 aa12.39□□□□□ -0.43
NPIPB4-213ENST00000541329 CUX1P39880 1505 aa12.38□□□□□ -0.43
NPIPB4-213ENST00000541329 EHMT2Q96KQ7 1210 aa12.38□□□□□ -0.43
NPIPB4-213ENST00000541329 FANCD2Q9BXW9 1451 aa12.36□□□□□ -0.43
NPIPB4-213ENST00000541329 KIF21AQ7Z4S6 1674 aa12.35□□□□□ -0.43
NPIPB4-213ENST00000541329 SOGA1O94964 1423 aa12.35□□□□□ -0.43
NPIPB4-213ENST00000541329 RUSC2Q8N2Y8 1516 aa12.33□□□□□ -0.44
NPIPB4-213ENST00000541329 THOC2Q8NI27 1593 aaKnown RBP12.31□□□□□ -0.44
NPIPB4-213ENST00000541329 CEP164Q9UPV0 1460 aa12.29□□□□□ -0.44
NPIPB4-213ENST00000541329 PHF23Q9BUL5 403 aaPredicted RBP12.28□□□□□ -0.44
NPIPB4-213ENST00000541329 PDS5BQ9NTI5 1447 aa12.27□□□□□ -0.45
NPIPB4-213ENST00000541329 DNMBPQ6XZF7 1577 aa12.26□□□□□ -0.45
NPIPB4-213ENST00000541329 EEA1Q15075 1411 aa12.26□□□□□ -0.45
NPIPB4-213ENST00000541329 FGD5Q6ZNL6 1462 aa12.25□□□□□ -0.45
NPIPB4-213ENST00000541329 TOPBP1Q92547 1522 aa12.23□□□□□ -0.45
NPIPB4-213ENST00000541329 URB2Q14146 1524 aaKnown RBP12.22□□□□□ -0.45
NPIPB4-213ENST00000541329 CSRNP3Q8WYN3 585 aa12.22□□□□□ -0.45
NPIPB4-213ENST00000541329 SENP3Q9H4L4 574 aaPredicted RBP12.22□□□□□ -0.45
NPIPB4-213ENST00000541329 OSCARQ8IYS5 282 aa12.2□□□□□ -0.46
NPIPB4-213ENST00000541329 HRCP23327 699 aa12.18□□□□□ -0.46
NPIPB4-213ENST00000541329 ILDR1Q86SU0 546 aaPredicted RBP12.18□□□□□ -0.46
NPIPB4-213ENST00000541329 KIF21BO75037 1637 aa12.17□□□□□ -0.46
NPIPB4-213ENST00000541329 POLA1P09884 1462 aaPredicted RBP12.16□□□□□ -0.46
NPIPB4-213ENST00000541329 RAD54L2Q9Y4B4 1467 aa12.16□□□□□ -0.46
NPIPB4-213ENST00000541329 KIF27Q86VH2 1401 aa12.16□□□□□ -0.46
NPIPB4-213ENST00000541329 WDR97A6NE52 1622 aa12.15□□□□□ -0.47
NPIPB4-213ENST00000541329 GOLGA3Q08378 1498 aa12.14□□□□□ -0.47
NPIPB4-213ENST00000541329 MRC2Q9UBG0 1479 aa12.14□□□□□ -0.47
NPIPB4-213ENST00000541329 TRHP20396 242 aaPredicted RBP12.14□□□□□ -0.47
NPIPB4-213ENST00000541329 RIMBP3CA6NJZ7 1639 aa12.13□□□□□ -0.47
NPIPB4-213ENST00000541329 RIMBP3BA6NNM3 1639 aa12.13□□□□□ -0.47
NPIPB4-213ENST00000541329 RIMBP3Q9UFD9 1639 aa12.13□□□□□ -0.47
NPIPB4-213ENST00000541329 UBTFP17480 764 aaKnown RBP12.12□□□□□ -0.47
NPIPB4-213ENST00000541329 RAPGEF2Q9Y4G8 1499 aa12.1□□□□□ -0.47
NPIPB4-213ENST00000541329 ABCA10Q8WWZ4 1543 aa12.09□□□□□ -0.47
NPIPB4-213ENST00000541329 WDR62O43379 1518 aa12.07□□□□□ -0.48
NPIPB4-213ENST00000541329 TARBP1Q13395 1621 aaKnown RBP12.07□□□□□ -0.48
NPIPB4-213ENST00000541329 TNIKQ9UKE5 1360 aa12.06□□□□□ -0.48
NPIPB4-213ENST00000541329 ERICH3Q5RHP9 1530 aa12.06□□□□□ -0.48
NPIPB4-213ENST00000541329 PRXQ9BXM0 1461 aa12.05□□□□□ -0.48
NPIPB4-213ENST00000541329 ABCA5Q8WWZ7 1642 aa12.04□□□□□ -0.48
NPIPB4-213ENST00000541329 CEP162Q5TB80 1403 aa12.04□□□□□ -0.48
NPIPB4-213ENST00000541329 PBRM1Q86U86 1689 aa12.03□□□□□ -0.48
NPIPB4-213ENST00000541329 IGF1RP08069 1367 aa12.03□□□□□ -0.48
NPIPB4-213ENST00000541329 TDRD9Q8NDG6 1382 aaKnown RBP12.02□□□□□ -0.49
NPIPB4-213ENST00000541329 ARHGEF11O15085 1522 aa12.01□□□□□ -0.49
NPIPB4-213ENST00000541329 CUL7Q14999 1698 aa12.01□□□□□ -0.49
NPIPB4-213ENST00000541329 RANGAP1P46060 587 aaPredicted RBP12.01□□□□□ -0.49
NPIPB4-213ENST00000541329 GAPVD1Q14C86 1478 aa12□□□□□ -0.49
NPIPB4-213ENST00000541329 CARMIL1Q5VZK9 1371 aa11.99□□□□□ -0.49
NPIPB4-213ENST00000541329 IFT140Q96RY7 1462 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms