Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC21.73■■□□□ 1.07
FOXA1P55317 SNX5-217ENST00000606557 1087 ntBASIC21.73■■□□□ 1.07
FOXA1P55317 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.73■■□□□ 1.07
FOXA1P55317 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
FOXA1P55317 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.73■■□□□ 1.07
FOXA1P55317 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.73■■□□□ 1.07
FOXA1P55317 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.72■■□□□ 1.07
FOXA1P55317 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
FOXA1P55317 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
FOXA1P55317 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
FOXA1P55317 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC21.72■■□□□ 1.07
FOXA1P55317 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.72■■□□□ 1.07
FOXA1P55317 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC21.72■■□□□ 1.07
FOXA1P55317 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
FOXA1P55317 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
FOXA1P55317 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
FOXA1P55317 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
FOXA1P55317 LINC00526-201ENST00000581067 1875 ntBASIC21.71■■□□□ 1.07
FOXA1P55317 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
FOXA1P55317 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
FOXA1P55317 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC21.71■■□□□ 1.07
FOXA1P55317 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.71■■□□□ 1.07
FOXA1P55317 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
FOXA1P55317 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
FOXA1P55317 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
FOXA1P55317 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
FOXA1P55317 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.71■■□□□ 1.07
FOXA1P55317 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
FOXA1P55317 CLDN5-201ENST00000403084 2357 ntBASIC21.7■■□□□ 1.07
FOXA1P55317 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
FOXA1P55317 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
FOXA1P55317 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.7■■□□□ 1.06
FOXA1P55317 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.7■■□□□ 1.06
FOXA1P55317 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
FOXA1P55317 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.69■■□□□ 1.06
FOXA1P55317 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.69■■□□□ 1.06
FOXA1P55317 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
FOXA1P55317 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.69■■□□□ 1.06
FOXA1P55317 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
FOXA1P55317 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.69■■□□□ 1.06
FOXA1P55317 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.69■■□□□ 1.06
FOXA1P55317 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
FOXA1P55317 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.69■■□□□ 1.06
FOXA1P55317 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.69■■□□□ 1.06
FOXA1P55317 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
FOXA1P55317 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
FOXA1P55317 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
FOXA1P55317 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC21.68■■□□□ 1.06
FOXA1P55317 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.68■■□□□ 1.06
FOXA1P55317 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXA1P55317 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.68■■□□□ 1.06
FOXA1P55317 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
FOXA1P55317 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
FOXA1P55317 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.68■■□□□ 1.06
FOXA1P55317 ECEL1P1-201ENST00000373592 1742 ntBASIC21.68■■□□□ 1.06
FOXA1P55317 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXA1P55317 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXA1P55317 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXA1P55317 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.68■■□□□ 1.06
FOXA1P55317 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
FOXA1P55317 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
FOXA1P55317 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
FOXA1P55317 REST-206ENST00000612429 1376 ntTSL 5 BASIC21.67■■□□□ 1.06
FOXA1P55317 REST-207ENST00000616975 1370 ntTSL 5 BASIC21.67■■□□□ 1.06
FOXA1P55317 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 YBX1P4-201ENST00000392794 808 ntBASIC21.67■■□□□ 1.06
FOXA1P55317 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.67■■□□□ 1.06
FOXA1P55317 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
FOXA1P55317 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.67■■□□□ 1.06
FOXA1P55317 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
FOXA1P55317 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FOXA1P55317 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FOXA1P55317 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.66■■□□□ 1.06
FOXA1P55317 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FOXA1P55317 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FOXA1P55317 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FOXA1P55317 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FOXA1P55317 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
FOXA1P55317 AC137630.3-201ENST00000607245 391 ntBASIC21.66■■□□□ 1.06
FOXA1P55317 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXA1P55317 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXA1P55317 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXA1P55317 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
FOXA1P55317 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
FOXA1P55317 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.65■■□□□ 1.06
FOXA1P55317 TK2-216ENST00000564917 1156 ntTSL 3 BASIC21.65■■□□□ 1.06
FOXA1P55317 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.65■■□□□ 1.06
FOXA1P55317 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXA1P55317 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
FOXA1P55317 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms