RNA–Protein interactions for RNA: ENST00000355119.8

LIMS2-202, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS2, Length 2,045 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-202ENST00000355119 NISCHQ9Y2I1 1504 aa46.42■■■■■ 5.02
LIMS2-202ENST00000355119 CCDC180Q9P1Z9 1646 aa39.87■■■■□ 3.97
LIMS2-202ENST00000355119 ZCCHC6Q5VYS8 1495 aaKnown RBP39.22■■■■□ 3.87
LIMS2-202ENST00000355119 SHROOM4Q9ULL8 1493 aa38.84■■■■□ 3.81
LIMS2-202ENST00000355119 DCAF1Q9Y4B6 1507 aa38.32■■■■□ 3.72
LIMS2-202ENST00000355119 DCAF8L2P0C7V8 631 aa38.13■■■■□ 3.69
LIMS2-202ENST00000355119 SUPT5HO00267 1087 aaKnown RBP37.94■■■■□ 3.66
LIMS2-202ENST00000355119 MYO15BQ96JP2 1530 aa37.4■■■■□ 3.58
LIMS2-202ENST00000355119 SCRIBQ14160 1630 aa36.96■■■■□ 3.51
LIMS2-202ENST00000355119 ABCC9O60706 1549 aa36.94■■■■□ 3.5
LIMS2-202ENST00000355119 NACADO15069 1562 aa36.89■■■■□ 3.5
LIMS2-202ENST00000355119 CHIC1Q5VXU3 224 aa36.88■■■■□ 3.49
LIMS2-202ENST00000355119 RSF1Q96T23 1441 aaPredicted RBP36.49■■■■□ 3.43
LIMS2-202ENST00000355119 RB1CC1Q8TDY2 1594 aa36.32■■■■□ 3.4
LIMS2-202ENST00000355119 CECR2Q9BXF3 1484 aa36.04■■■■□ 3.36
LIMS2-202ENST00000355119 MROH2BQ7Z745 1585 aa35.95■■■■□ 3.35
LIMS2-202ENST00000355119 BAZ1AQ9NRL2 1556 aaPredicted RBP35.74■■■■□ 3.31
LIMS2-202ENST00000355119 WIZO95785 1651 aa35.73■■■■□ 3.31
LIMS2-202ENST00000355119 UNC13AQ9UPW8 1703 aa35.66■■■■□ 3.3
LIMS2-202ENST00000355119 LOC105371045A0A1W2PR82 267 aa35.57■■■■□ 3.28
LIMS2-202ENST00000355119 TRIM41Q8WV44 630 aa35.54■■■■□ 3.28
LIMS2-202ENST00000355119 SMARCA4P51532 1647 aa35.45■■■■□ 3.26
LIMS2-202ENST00000355119 TOP2AP11388 1531 aaKnown RBP35.34■■■■□ 3.25
LIMS2-202ENST00000355119 EIF4G1Q04637 1599 aaKnown RBP35.24■■■■□ 3.23
LIMS2-202ENST00000355119 BICRAQ9NZM4 1560 aa35.24■■■■□ 3.23
LIMS2-202ENST00000355119 PCGF6Q9BYE7 350 aa35.17■■■■□ 3.22
LIMS2-202ENST00000355119 HRCP23327 699 aa35.09■■■■□ 3.21
LIMS2-202ENST00000355119 SMARCA2P51531 1590 aa35.07■■■■□ 3.2
LIMS2-202ENST00000355119 CCDC88BA6NC98 1476 aa35.04■■■■□ 3.2
LIMS2-202ENST00000355119 PABPN1Q86U42 306 aaKnown RBP eCLIP35.01■■■■□ 3.19
LIMS2-202ENST00000355119 FAM9AQ8IZU1 332 aaPredicted RBP35■■■■□ 3.19
LIMS2-202ENST00000355119 PEG3Q9GZU2 1588 aa34.91■■■■□ 3.18
LIMS2-202ENST00000355119 TRIM26Q12899 539 aaPredicted RBP34.84■■■■□ 3.17
LIMS2-202ENST00000355119 ABCC8Q09428 1581 aa34.71■■■■□ 3.15
LIMS2-202ENST00000355119 ATAD2BQ9ULI0 1458 aa34.59■■■■□ 3.13
LIMS2-202ENST00000355119 EHMT2Q96KQ7 1210 aa34.52■■■■□ 3.12
LIMS2-202ENST00000355119 BAZ1BQ9UIG0 1483 aaKnown RBP34.47■■■■□ 3.11
LIMS2-202ENST00000355119 EEA1Q15075 1411 aa34.4■■■■□ 3.1
LIMS2-202ENST00000355119 WRNQ14191 1432 aaPredicted RBP eCLIP34.31■■■■□ 3.08
LIMS2-202ENST00000355119 SOGA1O94964 1423 aa34.3■■■■□ 3.08
LIMS2-202ENST00000355119 CSRNP3Q8WYN3 585 aa34.16■■■■□ 3.06
LIMS2-202ENST00000355119 TNIKQ9UKE5 1360 aa34.14■■■■□ 3.06
LIMS2-202ENST00000355119 SYNJ1O43426 1573 aa34.13■■■■□ 3.05
LIMS2-202ENST00000355119 PPARGC1BQ86YN6 1023 aaKnown RBP34.13■■■■□ 3.05
LIMS2-202ENST00000355119 RUSC2Q8N2Y8 1516 aa34.11■■■■□ 3.05
LIMS2-202ENST00000355119 HMGXB3Q12766 1538 aa34.1■■■■□ 3.05
LIMS2-202ENST00000355119 NCAPD3P42695 1498 aa34.06■■■■□ 3.04
LIMS2-202ENST00000355119 CEP162Q5TB80 1403 aa34.05■■■■□ 3.04
LIMS2-202ENST00000355119 ZEB1P37275 1124 aaPredicted RBP34.05■■■■□ 3.04
LIMS2-202ENST00000355119 GOLGA3Q08378 1498 aa34.02■■■■□ 3.04
LIMS2-202ENST00000355119 KIF21BO75037 1637 aa33.9■■■■□ 3.02
LIMS2-202ENST00000355119 CEP164Q9UPV0 1460 aa33.89■■■■□ 3.02
LIMS2-202ENST00000355119 UBTFP17480 764 aaKnown RBP33.87■■■■□ 3.01
LIMS2-202ENST00000355119 TOP2BQ02880 1626 aa33.87■■■■□ 3.01
LIMS2-202ENST00000355119 BIVM-ERCC5R4GMW8 1640 aa33.81■■■■□ 3
LIMS2-202ENST00000355119 CFTRP13569 1480 aa33.64■■■□□ 2.98
LIMS2-202ENST00000355119 CUX1P39880 1505 aa33.54■■■□□ 2.96
LIMS2-202ENST00000355119 RAPGEF2Q9Y4G8 1499 aa33.53■■■□□ 2.96
LIMS2-202ENST00000355119 CLIP1P30622 1438 aa33.53■■■□□ 2.96
LIMS2-202ENST00000355119 PRDM2Q13029 1718 aa33.51■■■□□ 2.95
LIMS2-202ENST00000355119 ERICH3Q5RHP9 1530 aa33.45■■■□□ 2.95
LIMS2-202ENST00000355119 PRXQ9BXM0 1461 aa33.4■■■□□ 2.94
LIMS2-202ENST00000355119 VPS8Q8N3P4 1428 aa33.38■■■□□ 2.93
LIMS2-202ENST00000355119 TTBK1Q5TCY1 1321 aaPredicted RBP33.35■■■□□ 2.93
LIMS2-202ENST00000355119 KIF27Q86VH2 1401 aa33.34■■■□□ 2.93
LIMS2-202ENST00000355119 CCER1Q8TC90 406 aaPredicted RBP33.31■■■□□ 2.92
LIMS2-202ENST00000355119 CADPSQ9ULU8 1353 aa33.3■■■□□ 2.92
LIMS2-202ENST00000355119 CC2D2AQ9P2K1 1620 aa33.3■■■□□ 2.92
LIMS2-202ENST00000355119 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP33.29■■■□□ 2.92
LIMS2-202ENST00000355119 APLP2Q06481 763 aa33.14■■■□□ 2.9
LIMS2-202ENST00000355119 ARAP1Q96P48 1450 aa33.05■■■□□ 2.88
LIMS2-202ENST00000355119 RANGAP1P46060 587 aaPredicted RBP33.04■■■□□ 2.88
LIMS2-202ENST00000355119 CUX2O14529 1486 aa33.02■■■□□ 2.88
LIMS2-202ENST00000355119 FGD5Q6ZNL6 1462 aa32.99■■■□□ 2.87
LIMS2-202ENST00000355119 FANCD2Q9BXW9 1451 aa32.96■■■□□ 2.87
LIMS2-202ENST00000355119 IGF1RP08069 1367 aa32.93■■■□□ 2.86
LIMS2-202ENST00000355119 DNMBPQ6XZF7 1577 aa32.85■■■□□ 2.85
LIMS2-202ENST00000355119 ARHGAP35Q9NRY4 1499 aa32.82■■■□□ 2.85
LIMS2-202ENST00000355119 CARMIL1Q5VZK9 1371 aa32.8■■■□□ 2.84
LIMS2-202ENST00000355119 HNRNPUL2Q1KMD3 747 aaKnown RBP32.8■■■□□ 2.84
LIMS2-202ENST00000355119 TOPBP1Q92547 1522 aa32.73■■■□□ 2.83
LIMS2-202ENST00000355119 LAMC3Q9Y6N6 1575 aa32.71■■■□□ 2.83
LIMS2-202ENST00000355119 ABCA10Q8WWZ4 1543 aa32.7■■■□□ 2.82
LIMS2-202ENST00000355119 NESP48681 1621 aa32.69■■■□□ 2.82
LIMS2-202ENST00000355119 POLA1P09884 1462 aaPredicted RBP32.65■■■□□ 2.82
LIMS2-202ENST00000355119 KANK4Q5T7N3 995 aaPredicted RBP32.63■■■□□ 2.81
LIMS2-202ENST00000355119 RAD54L2Q9Y4B4 1467 aa32.61■■■□□ 2.81
LIMS2-202ENST00000355119 RRBP1Q9P2E9 1410 aaKnown RBP32.57■■■□□ 2.8
LIMS2-202ENST00000355119 MAP3K1Q13233 1512 aa32.56■■■□□ 2.8
LIMS2-202ENST00000355119 CUL7Q14999 1698 aa32.54■■■□□ 2.8
LIMS2-202ENST00000355119 URB2Q14146 1524 aaKnown RBP32.49■■■□□ 2.79
LIMS2-202ENST00000355119 TIAM1Q13009 1591 aa32.47■■■□□ 2.79
LIMS2-202ENST00000355119 WDR97A6NE52 1622 aa32.47■■■□□ 2.79
LIMS2-202ENST00000355119 PDS5BQ9NTI5 1447 aa32.45■■■□□ 2.79
LIMS2-202ENST00000355119 FHAD1B1AJZ9 1412 aa32.44■■■□□ 2.78
LIMS2-202ENST00000355119 DIEXFQ68CQ4 756 aaKnown RBP32.43■■■□□ 2.78
LIMS2-202ENST00000355119 CCNB3Q8WWL7 1395 aa32.4■■■□□ 2.78
LIMS2-202ENST00000355119 EFCAB5A4FU69 1503 aa32.39■■■□□ 2.78
LIMS2-202ENST00000355119 CLSPNQ9HAW4 1339 aa32.39■■■□□ 2.78
LIMS2-202ENST00000355119 ZNF316A6NFI3 1004 aaPredicted RBP32.39■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms