Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH3P20585 QDPR-206ENST00000508623 601 ntTSL 3 BASIC22.26■■□□□ 1.15
MSH3P20585 AC131281.2-201ENST00000520478 145 ntBASIC22.26■■□□□ 1.15
MSH3P20585 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH3P20585 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH3P20585 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC22.26■■□□□ 1.15
MSH3P20585 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.26■■□□□ 1.15
MSH3P20585 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH3P20585 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC22.25■■□□□ 1.15
MSH3P20585 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC22.25■■□□□ 1.15
MSH3P20585 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
MSH3P20585 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSH3P20585 CASK-201ENST00000378154 2494 ntTSL 5 BASIC22.25■■□□□ 1.15
MSH3P20585 AC008406.3-201ENST00000620001 1374 ntBASIC22.25■■□□□ 1.15
MSH3P20585 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
MSH3P20585 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
MSH3P20585 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
MSH3P20585 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.24■■□□□ 1.15
MSH3P20585 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC22.24■■□□□ 1.15
MSH3P20585 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSH3P20585 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.23■■□□□ 1.15
MSH3P20585 C17orf82-201ENST00000623772 1530 ntBASIC22.23■■□□□ 1.15
MSH3P20585 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
MSH3P20585 SRD5A1P1-201ENST00000442297 786 ntBASIC22.23■■□□□ 1.15
MSH3P20585 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC22.23■■□□□ 1.15
MSH3P20585 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC22.23■■□□□ 1.15
MSH3P20585 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.23■■□□□ 1.15
MSH3P20585 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.23■■□□□ 1.15
MSH3P20585 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC22.23■■□□□ 1.15
MSH3P20585 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC22.23■■□□□ 1.15
MSH3P20585 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
MSH3P20585 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH3P20585 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH3P20585 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.22■■□□□ 1.15
MSH3P20585 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.22■■□□□ 1.15
MSH3P20585 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH3P20585 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC22.22■■□□□ 1.15
MSH3P20585 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH3P20585 MIR4466-201ENST00000606121 54 ntBASIC22.22■■□□□ 1.15
MSH3P20585 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.22■■□□□ 1.15
MSH3P20585 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH3P20585 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC22.22■■□□□ 1.15
MSH3P20585 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH3P20585 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
MSH3P20585 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.22■■□□□ 1.15
MSH3P20585 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
MSH3P20585 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH3P20585 AC133561.1-201ENST00000568600 2415 ntBASIC22.21■■□□□ 1.15
MSH3P20585 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
MSH3P20585 AL136116.3-201ENST00000402907 1138 ntBASIC22.21■■□□□ 1.15
MSH3P20585 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.21■■□□□ 1.15
MSH3P20585 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
MSH3P20585 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.21■■□□□ 1.15
MSH3P20585 GATM-206ENST00000558336 1522 ntTSL 2 BASIC22.21■■□□□ 1.15
MSH3P20585 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC22.21■■□□□ 1.15
MSH3P20585 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH3P20585 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH3P20585 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH3P20585 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.2■■□□□ 1.14
MSH3P20585 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC22.2■■□□□ 1.14
MSH3P20585 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC22.2■■□□□ 1.14
MSH3P20585 ANOS2P-203ENST00000472227 1816 ntBASIC22.2■■□□□ 1.14
MSH3P20585 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH3P20585 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC22.19■■□□□ 1.14
MSH3P20585 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH3P20585 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH3P20585 AC079630.1-202ENST00000618127 1840 ntBASIC22.19■■□□□ 1.14
MSH3P20585 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH3P20585 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC22.19■■□□□ 1.14
MSH3P20585 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC22.19■■□□□ 1.14
MSH3P20585 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
MSH3P20585 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
MSH3P20585 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.18■■□□□ 1.14
MSH3P20585 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH3P20585 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH3P20585 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC22.18■■□□□ 1.14
MSH3P20585 AC144652.1-201ENST00000609974 1624 ntBASIC22.18■■□□□ 1.14
MSH3P20585 AC068473.5-201ENST00000616428 2072 ntBASIC22.18■■□□□ 1.14
MSH3P20585 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH3P20585 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH3P20585 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH3P20585 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH3P20585 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH3P20585 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
MSH3P20585 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.17■■□□□ 1.14
MSH3P20585 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC22.17■■□□□ 1.14
MSH3P20585 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH3P20585 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC22.17■■□□□ 1.14
MSH3P20585 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC22.17■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms