Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
SMKR1H3BMG3 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SMKR1H3BMG3 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SMKR1H3BMG3 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.21
SMKR1H3BMG3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
SMKR1H3BMG3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
SMKR1H3BMG3 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
SMKR1H3BMG3 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 REST-210ENST00000638187 1334 ntTSL 5 BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 ESRRAP2-201ENST00000418437 1549 ntBASIC16.33■□□□□ 0.2
SMKR1H3BMG3 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 BID-212ENST00000614949 1988 ntTSL 5 BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
SMKR1H3BMG3 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 FBXW4P1-201ENST00000426721 2239 ntBASIC16.32■□□□□ 0.2
SMKR1H3BMG3 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC16.32■□□□□ 0.2
SMKR1H3BMG3 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SMKR1H3BMG3 C11orf96-202ENST00000528572 1834 ntBASIC16.31■□□□□ 0.2
SMKR1H3BMG3 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 RPS2P35-201ENST00000443417 897 ntBASIC16.3■□□□□ 0.2
SMKR1H3BMG3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC16.3■□□□□ 0.2
SMKR1H3BMG3 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 AC092296.2-201ENST00000589470 999 ntBASIC16.29■□□□□ 0.2
SMKR1H3BMG3 GDI1-215ENST00000630693 786 ntTSL 4 BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SMKR1H3BMG3 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMKR1H3BMG3 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMKR1H3BMG3 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMKR1H3BMG3 AC090877.2-201ENST00000558441 1738 ntBASIC16.28■□□□□ 0.2
SMKR1H3BMG3 AC139530.1-201ENST00000575312 1977 ntBASIC16.28■□□□□ 0.2
SMKR1H3BMG3 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMKR1H3BMG3 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC16.28■□□□□ 0.2
SMKR1H3BMG3 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMKR1H3BMG3 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMKR1H3BMG3 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
SMKR1H3BMG3 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SMKR1H3BMG3 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
SMKR1H3BMG3 AC092053.2-201ENST00000640557 1818 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms