Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV41A0A0B4J266 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
TRAV41A0A0B4J266 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 ASB1-202ENST00000409297 878 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 PEMT-206ENST00000435340 960 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 VGF-203ENST00000611537 1622 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC17.61■□□□□ 0.41
TRAV41A0A0B4J266 H19-210ENST00000439725 1929 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV41A0A0B4J266 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV41A0A0B4J266 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAV41A0A0B4J266 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV41A0A0B4J266 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV41A0A0B4J266 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAV41A0A0B4J266 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.6■□□□□ 0.41
TRAV41A0A0B4J266 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV41A0A0B4J266 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC17.6■□□□□ 0.41
TRAV41A0A0B4J266 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV41A0A0B4J266 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 LINC01529-204ENST00000636474 1715 ntBASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 AC099791.2-201ENST00000605725 427 ntBASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 AC009086.3-201ENST00000623486 1008 ntBASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV41A0A0B4J266 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC17.58■□□□□ 0.41
TRAV41A0A0B4J266 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV41A0A0B4J266 AC092068.2-201ENST00000590491 1708 ntBASIC17.58■□□□□ 0.41
TRAV41A0A0B4J266 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV41A0A0B4J266 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV41A0A0B4J266 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV41A0A0B4J266 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC17.58■□□□□ 0.4
TRAV41A0A0B4J266 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV41A0A0B4J266 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV41A0A0B4J266 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV41A0A0B4J266 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV41A0A0B4J266 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 DUX4L19-201ENST00000557448 1267 ntBASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV41A0A0B4J266 ARSB-202ENST00000396151 2316 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV41A0A0B4J266 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAV41A0A0B4J266 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV41A0A0B4J266 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV41A0A0B4J266 DUX4L4-201ENST00000566884 1269 ntBASIC17.55■□□□□ 0.4
TRAV41A0A0B4J266 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC17.55■□□□□ 0.4
TRAV41A0A0B4J266 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
TRAV41A0A0B4J266 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV41A0A0B4J266 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC17.55■□□□□ 0.4
TRAV41A0A0B4J266 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
TRAV41A0A0B4J266 AL353803.4-201ENST00000565882 1934 ntBASIC17.55■□□□□ 0.4
TRAV41A0A0B4J266 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms