Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.05
LINC01558Q9Y6Z2 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.05
LINC01558Q9Y6Z2 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC01558Q9Y6Z2 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC01558Q9Y6Z2 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LINC01558Q9Y6Z2 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC14.76□□□□□ -0.05
LINC01558Q9Y6Z2 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
LINC01558Q9Y6Z2 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
LINC01558Q9Y6Z2 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC14.75□□□□□ -0.05
LINC01558Q9Y6Z2 ABCB10P1-201ENST00000614297 2181 ntBASIC14.75□□□□□ -0.05
LINC01558Q9Y6Z2 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
LINC01558Q9Y6Z2 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC14.75□□□□□ -0.05
LINC01558Q9Y6Z2 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC14.74□□□□□ -0.05
LINC01558Q9Y6Z2 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC14.74□□□□□ -0.05
LINC01558Q9Y6Z2 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
LINC01558Q9Y6Z2 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC01558Q9Y6Z2 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
LINC01558Q9Y6Z2 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC01558Q9Y6Z2 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC01558Q9Y6Z2 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC14.73□□□□□ -0.05
LINC01558Q9Y6Z2 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC14.72□□□□□ -0.05
LINC01558Q9Y6Z2 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC01558Q9Y6Z2 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LINC01558Q9Y6Z2 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
LINC01558Q9Y6Z2 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
LINC01558Q9Y6Z2 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LINC01558Q9Y6Z2 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC14.7□□□□□ -0.06
LINC01558Q9Y6Z2 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC14.7□□□□□ -0.06
LINC01558Q9Y6Z2 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
LINC01558Q9Y6Z2 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
LINC01558Q9Y6Z2 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC14.67□□□□□ -0.06
LINC01558Q9Y6Z2 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
LINC01558Q9Y6Z2 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC01558Q9Y6Z2 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC14.65□□□□□ -0.06
LINC01558Q9Y6Z2 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
LINC01558Q9Y6Z2 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC14.65□□□□□ -0.06
LINC01558Q9Y6Z2 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
LINC01558Q9Y6Z2 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC14.64□□□□□ -0.07
LINC01558Q9Y6Z2 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC14.64□□□□□ -0.07
LINC01558Q9Y6Z2 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01558Q9Y6Z2 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01558Q9Y6Z2 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC01558Q9Y6Z2 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01558Q9Y6Z2 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC01558Q9Y6Z2 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
LINC01558Q9Y6Z2 ILK-212ENST00000532063 1617 ntTSL 2 BASIC14.62□□□□□ -0.07
LINC01558Q9Y6Z2 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC01558Q9Y6Z2 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
LINC01558Q9Y6Z2 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LINC01558Q9Y6Z2 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
LINC01558Q9Y6Z2 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
LINC01558Q9Y6Z2 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC01558Q9Y6Z2 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
LINC01558Q9Y6Z2 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC01558Q9Y6Z2 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC14.57□□□□□ -0.08
LINC01558Q9Y6Z2 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
LINC01558Q9Y6Z2 SNAI3-AS1-204ENST00000567997 2048 ntBASIC14.56□□□□□ -0.08
LINC01558Q9Y6Z2 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
LINC01558Q9Y6Z2 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
LINC01558Q9Y6Z2 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC01558Q9Y6Z2 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
LINC01558Q9Y6Z2 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC01558Q9Y6Z2 CREM-210ENST00000374721 2020 ntTSL 5 BASIC14.54□□□□□ -0.08
LINC01558Q9Y6Z2 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
LINC01558Q9Y6Z2 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
LINC01558Q9Y6Z2 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC01558Q9Y6Z2 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
LINC01558Q9Y6Z2 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
LINC01558Q9Y6Z2 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
LINC01558Q9Y6Z2 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
LINC01558Q9Y6Z2 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
LINC01558Q9Y6Z2 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC01558Q9Y6Z2 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC14.5□□□□□ -0.09
LINC01558Q9Y6Z2 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC01558Q9Y6Z2 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC01558Q9Y6Z2 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
LINC01558Q9Y6Z2 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC14.5□□□□□ -0.09
LINC01558Q9Y6Z2 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC14.49□□□□□ -0.09
LINC01558Q9Y6Z2 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC14.49□□□□□ -0.09
LINC01558Q9Y6Z2 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC14.49□□□□□ -0.09
LINC01558Q9Y6Z2 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
LINC01558Q9Y6Z2 SHF-207ENST00000560540 2062 ntTSL 5 BASIC14.49□□□□□ -0.09
LINC01558Q9Y6Z2 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC14.49□□□□□ -0.09
LINC01558Q9Y6Z2 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC01558Q9Y6Z2 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LINC01558Q9Y6Z2 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC01558Q9Y6Z2 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
LINC01558Q9Y6Z2 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LINC01558Q9Y6Z2 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01558Q9Y6Z2 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
LINC01558Q9Y6Z2 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC14.45□□□□□ -0.1
LINC01558Q9Y6Z2 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
LINC01558Q9Y6Z2 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LINC01558Q9Y6Z2 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LINC01558Q9Y6Z2 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC01558Q9Y6Z2 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC01558Q9Y6Z2 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LINC01558Q9Y6Z2 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC14.41□□□□□ -0.1
LINC01558Q9Y6Z2 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LINC01558Q9Y6Z2 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms