Protein–RNA interactions for Protein: Q9Y5X4

NR2E3, Photoreceptor-specific nuclear receptor, humanhuman

Predictions only

Length 410 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR2E3Q9Y5X4 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC31.81■■■□□ 2.68
NR2E3Q9Y5X4 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
NR2E3Q9Y5X4 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.78■■■□□ 2.68
NR2E3Q9Y5X4 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.76■■■□□ 2.67
NR2E3Q9Y5X4 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.75■■■□□ 2.67
NR2E3Q9Y5X4 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.75■■■□□ 2.67
NR2E3Q9Y5X4 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.73■■■□□ 2.67
NR2E3Q9Y5X4 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
NR2E3Q9Y5X4 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC31.7■■■□□ 2.67
NR2E3Q9Y5X4 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.68■■■□□ 2.66
NR2E3Q9Y5X4 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.65■■■□□ 2.66
NR2E3Q9Y5X4 AC087741.3-201ENST00000624270 1347 ntBASIC31.65■■■□□ 2.66
NR2E3Q9Y5X4 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
NR2E3Q9Y5X4 AC044849.2-201ENST00000606596 710 ntBASIC31.6■■■□□ 2.65
NR2E3Q9Y5X4 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
NR2E3Q9Y5X4 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
NR2E3Q9Y5X4 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.58■■■□□ 2.65
NR2E3Q9Y5X4 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC31.57■■■□□ 2.64
NR2E3Q9Y5X4 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.57■■■□□ 2.64
NR2E3Q9Y5X4 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
NR2E3Q9Y5X4 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC31.56■■■□□ 2.64
NR2E3Q9Y5X4 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.54■■■□□ 2.64
NR2E3Q9Y5X4 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC31.54■■■□□ 2.64
NR2E3Q9Y5X4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.53■■■□□ 2.64
NR2E3Q9Y5X4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
NR2E3Q9Y5X4 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.52■■■□□ 2.64
NR2E3Q9Y5X4 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.51■■■□□ 2.64
NR2E3Q9Y5X4 AL133380.1-201ENST00000506013 324 ntBASIC31.5■■■□□ 2.63
NR2E3Q9Y5X4 DUX4L28-201ENST00000623687 678 ntBASIC31.48■■■□□ 2.63
NR2E3Q9Y5X4 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
NR2E3Q9Y5X4 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC31.46■■■□□ 2.63
NR2E3Q9Y5X4 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
NR2E3Q9Y5X4 ZNRF2P2-203ENST00000454624 420 ntBASIC31.44■■■□□ 2.62
NR2E3Q9Y5X4 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
NR2E3Q9Y5X4 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
NR2E3Q9Y5X4 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC31.43■■■□□ 2.62
NR2E3Q9Y5X4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.42■■■□□ 2.62
NR2E3Q9Y5X4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.42■■■□□ 2.62
NR2E3Q9Y5X4 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.41■■■□□ 2.62
NR2E3Q9Y5X4 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC31.41■■■□□ 2.62
NR2E3Q9Y5X4 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC31.4■■■□□ 2.62
NR2E3Q9Y5X4 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.4■■■□□ 2.62
NR2E3Q9Y5X4 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.37■■■□□ 2.61
NR2E3Q9Y5X4 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
NR2E3Q9Y5X4 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
NR2E3Q9Y5X4 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.34■■■□□ 2.61
NR2E3Q9Y5X4 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.34■■■□□ 2.61
NR2E3Q9Y5X4 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
NR2E3Q9Y5X4 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
NR2E3Q9Y5X4 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
NR2E3Q9Y5X4 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
NR2E3Q9Y5X4 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC31.32■■■□□ 2.6
NR2E3Q9Y5X4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
NR2E3Q9Y5X4 AC005559.1-201ENST00000589661 871 ntBASIC31.31■■■□□ 2.6
NR2E3Q9Y5X4 MIR762-201ENST00000390236 83 ntBASIC31.29■■■□□ 2.6
NR2E3Q9Y5X4 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
NR2E3Q9Y5X4 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
NR2E3Q9Y5X4 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
NR2E3Q9Y5X4 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.28■■■□□ 2.6
NR2E3Q9Y5X4 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.59
NR2E3Q9Y5X4 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NR2E3Q9Y5X4 MIR4449-201ENST00000578365 66 ntBASIC31.22■■■□□ 2.59
NR2E3Q9Y5X4 AC145285.7-201ENST00000614819 1539 ntBASIC31.2■■■□□ 2.59
NR2E3Q9Y5X4 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.2■■■□□ 2.59
NR2E3Q9Y5X4 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.18■■■□□ 2.58
NR2E3Q9Y5X4 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
NR2E3Q9Y5X4 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
NR2E3Q9Y5X4 RPS2-202ENST00000526522 924 ntTSL 2 BASIC31.15■■■□□ 2.58
NR2E3Q9Y5X4 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.15■■■□□ 2.58
NR2E3Q9Y5X4 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
NR2E3Q9Y5X4 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
NR2E3Q9Y5X4 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.12■■■□□ 2.57
NR2E3Q9Y5X4 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.11■■■□□ 2.57
NR2E3Q9Y5X4 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.11■■■□□ 2.57
NR2E3Q9Y5X4 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
NR2E3Q9Y5X4 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
NR2E3Q9Y5X4 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.08■■■□□ 2.57
NR2E3Q9Y5X4 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
NR2E3Q9Y5X4 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.06■■■□□ 2.56
NR2E3Q9Y5X4 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.04■■■□□ 2.56
NR2E3Q9Y5X4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.04■■■□□ 2.56
NR2E3Q9Y5X4 MIR639-201ENST00000384974 98 ntBASIC31.04■■■□□ 2.56
NR2E3Q9Y5X4 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
NR2E3Q9Y5X4 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.03■■■□□ 2.56
NR2E3Q9Y5X4 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.03■■■□□ 2.56
NR2E3Q9Y5X4 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31.03■■■□□ 2.56
NR2E3Q9Y5X4 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
NR2E3Q9Y5X4 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
NR2E3Q9Y5X4 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.02■■■□□ 2.56
NR2E3Q9Y5X4 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
NR2E3Q9Y5X4 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.01■■■□□ 2.55
NR2E3Q9Y5X4 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
NR2E3Q9Y5X4 HSD17B1P1-201ENST00000590052 955 ntBASIC30.98■■■□□ 2.55
NR2E3Q9Y5X4 ILK-212ENST00000532063 1617 ntTSL 2 BASIC30.98■■■□□ 2.55
NR2E3Q9Y5X4 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC30.97■■■□□ 2.55
NR2E3Q9Y5X4 CALM3-209ENST00000597743 577 ntTSL 4 BASIC30.96■■■□□ 2.55
NR2E3Q9Y5X4 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
NR2E3Q9Y5X4 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC30.92■■■□□ 2.54
NR2E3Q9Y5X4 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.91■■■□□ 2.54
NR2E3Q9Y5X4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 67.2 ms