Protein–RNA interactions for Protein: Q96JI7

SPG11, Spatacsin, humanhuman

Predictions only

Length 2,443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11Q96JI7 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC24.31■■□□□ 1.48
SPG11Q96JI7 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC24.31■■□□□ 1.48
SPG11Q96JI7 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC24.3■■□□□ 1.48
SPG11Q96JI7 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC24.29■■□□□ 1.48
SPG11Q96JI7 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC24.29■■□□□ 1.48
SPG11Q96JI7 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
SPG11Q96JI7 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC24.25■■□□□ 1.47
SPG11Q96JI7 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
SPG11Q96JI7 MIR3665-201ENST00000578708 105 ntBASIC24.24■■□□□ 1.47
SPG11Q96JI7 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
SPG11Q96JI7 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
SPG11Q96JI7 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SPG11Q96JI7 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
SPG11Q96JI7 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
SPG11Q96JI7 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
SPG11Q96JI7 MLEC-202ENST00000412616 841 ntTSL 3 BASIC24.2■■□□□ 1.46
SPG11Q96JI7 ILK-212ENST00000532063 1617 ntTSL 2 BASIC24.2■■□□□ 1.46
SPG11Q96JI7 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC24.2■■□□□ 1.46
SPG11Q96JI7 MVK-208ENST00000539696 608 ntTSL 5 BASIC24.2■■□□□ 1.46
SPG11Q96JI7 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC24.15■■□□□ 1.46
SPG11Q96JI7 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
SPG11Q96JI7 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC24.13■■□□□ 1.45
SPG11Q96JI7 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SPG11Q96JI7 AC087741.3-201ENST00000624270 1347 ntBASIC24.11■■□□□ 1.45
SPG11Q96JI7 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SPG11Q96JI7 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC24.1■■□□□ 1.45
SPG11Q96JI7 AL133380.1-201ENST00000506013 324 ntBASIC24.09■■□□□ 1.45
SPG11Q96JI7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
SPG11Q96JI7 AC044849.2-201ENST00000606596 710 ntBASIC24.05■■□□□ 1.44
SPG11Q96JI7 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC24.04■■□□□ 1.44
SPG11Q96JI7 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SPG11Q96JI7 CHML-205ENST00000638160 705 ntTSL 3 BASIC24.02■■□□□ 1.44
SPG11Q96JI7 MIR762-201ENST00000390236 83 ntBASIC24.01■■□□□ 1.43
SPG11Q96JI7 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC24.01■■□□□ 1.43
SPG11Q96JI7 DUX4L28-201ENST00000623687 678 ntBASIC24.01■■□□□ 1.43
SPG11Q96JI7 MBP-237ENST00000579129 1052 ntTSL 5 BASIC24■■□□□ 1.43
SPG11Q96JI7 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
SPG11Q96JI7 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC23.97■■□□□ 1.43
SPG11Q96JI7 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC23.97■■□□□ 1.43
SPG11Q96JI7 EBPL-202ENST00000378268 680 ntTSL 3 BASIC23.95■■□□□ 1.42
SPG11Q96JI7 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC23.95■■□□□ 1.42
SPG11Q96JI7 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC23.94■■□□□ 1.42
SPG11Q96JI7 AC005559.1-201ENST00000589661 871 ntBASIC23.94■■□□□ 1.42
SPG11Q96JI7 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC23.92■■□□□ 1.42
SPG11Q96JI7 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.9■■□□□ 1.42
SPG11Q96JI7 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC23.9■■□□□ 1.42
SPG11Q96JI7 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC23.9■■□□□ 1.42
SPG11Q96JI7 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23.9■■□□□ 1.42
SPG11Q96JI7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.89■■□□□ 1.42
SPG11Q96JI7 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC23.89■■□□□ 1.42
SPG11Q96JI7 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC23.89■■□□□ 1.42
SPG11Q96JI7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC23.88■■□□□ 1.41
SPG11Q96JI7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC23.88■■□□□ 1.41
SPG11Q96JI7 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC23.87■■□□□ 1.41
SPG11Q96JI7 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.86■■□□□ 1.41
SPG11Q96JI7 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
SPG11Q96JI7 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC23.85■■□□□ 1.41
SPG11Q96JI7 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SPG11Q96JI7 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
SPG11Q96JI7 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
SPG11Q96JI7 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC23.83■■□□□ 1.41
SPG11Q96JI7 RPS2-202ENST00000526522 924 ntTSL 2 BASIC23.83■■□□□ 1.41
SPG11Q96JI7 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC23.83■■□□□ 1.41
SPG11Q96JI7 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
SPG11Q96JI7 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.83■■□□□ 1.41
SPG11Q96JI7 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
SPG11Q96JI7 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SPG11Q96JI7 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SPG11Q96JI7 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SPG11Q96JI7 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
SPG11Q96JI7 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC23.79■■□□□ 1.4
SPG11Q96JI7 DENR-202ENST00000455982 1052 ntTSL 5 BASIC23.79■■□□□ 1.4
SPG11Q96JI7 MIR4449-201ENST00000578365 66 ntBASIC23.78■■□□□ 1.4
SPG11Q96JI7 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.78■■□□□ 1.4
SPG11Q96JI7 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC23.77■■□□□ 1.4
SPG11Q96JI7 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SPG11Q96JI7 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC23.76■■□□□ 1.39
SPG11Q96JI7 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC23.76■■□□□ 1.39
SPG11Q96JI7 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SPG11Q96JI7 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
SPG11Q96JI7 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.73■■□□□ 1.39
SPG11Q96JI7 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.73■■□□□ 1.39
SPG11Q96JI7 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
SPG11Q96JI7 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC23.71■■□□□ 1.39
SPG11Q96JI7 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC23.7■■□□□ 1.38
SPG11Q96JI7 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
SPG11Q96JI7 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SPG11Q96JI7 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC23.69■■□□□ 1.38
SPG11Q96JI7 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC23.69■■□□□ 1.38
SPG11Q96JI7 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
SPG11Q96JI7 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC23.69■■□□□ 1.38
SPG11Q96JI7 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
SPG11Q96JI7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC23.67■■□□□ 1.38
SPG11Q96JI7 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC23.65■■□□□ 1.38
SPG11Q96JI7 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
SPG11Q96JI7 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
SPG11Q96JI7 ZNRF2P2-203ENST00000454624 420 ntBASIC23.63■■□□□ 1.37
SPG11Q96JI7 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC23.6■■□□□ 1.37
SPG11Q96JI7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
SPG11Q96JI7 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC23.59■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 15.5 ms