Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AP006261.1-201ENST00000584783 668 ntBASIC8.49□□□□□ -1.05
SYNE1Q8NF91 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC8.48□□□□□ -1.05
SYNE1Q8NF91 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC8.48□□□□□ -1.05
SYNE1Q8NF91 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
SYNE1Q8NF91 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC8.48□□□□□ -1.05
SYNE1Q8NF91 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
SYNE1Q8NF91 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC8.48□□□□□ -1.05
SYNE1Q8NF91 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC8.48□□□□□ -1.05
SYNE1Q8NF91 HNRNPLP2-201ENST00000568980 1570 ntBASIC8.48□□□□□ -1.05
SYNE1Q8NF91 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC8.48□□□□□ -1.05
SYNE1Q8NF91 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC8.47□□□□□ -1.05
SYNE1Q8NF91 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC8.47□□□□□ -1.05
SYNE1Q8NF91 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC8.46□□□□□ -1.06
SYNE1Q8NF91 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC8.46□□□□□ -1.06
SYNE1Q8NF91 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC8.45□□□□□ -1.06
SYNE1Q8NF91 MIR3665-201ENST00000578708 105 ntBASIC8.44□□□□□ -1.06
SYNE1Q8NF91 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC8.44□□□□□ -1.06
SYNE1Q8NF91 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
SYNE1Q8NF91 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
SYNE1Q8NF91 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC8.44□□□□□ -1.06
SYNE1Q8NF91 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
SYNE1Q8NF91 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC8.44□□□□□ -1.06
SYNE1Q8NF91 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC8.44□□□□□ -1.06
SYNE1Q8NF91 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC8.43□□□□□ -1.06
SYNE1Q8NF91 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
SYNE1Q8NF91 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
SYNE1Q8NF91 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC8.43□□□□□ -1.06
SYNE1Q8NF91 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC8.43□□□□□ -1.06
SYNE1Q8NF91 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC8.43□□□□□ -1.06
SYNE1Q8NF91 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC8.43□□□□□ -1.06
SYNE1Q8NF91 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC8.42□□□□□ -1.06
SYNE1Q8NF91 MVK-208ENST00000539696 608 ntTSL 5 BASIC8.41□□□□□ -1.06
SYNE1Q8NF91 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC8.41□□□□□ -1.06
SYNE1Q8NF91 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC8.41□□□□□ -1.06
SYNE1Q8NF91 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
SYNE1Q8NF91 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
SYNE1Q8NF91 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC8.4□□□□□ -1.06
SYNE1Q8NF91 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC8.4□□□□□ -1.06
SYNE1Q8NF91 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC8.4□□□□□ -1.06
SYNE1Q8NF91 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC8.4□□□□□ -1.06
SYNE1Q8NF91 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC8.4□□□□□ -1.06
SYNE1Q8NF91 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
SYNE1Q8NF91 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
SYNE1Q8NF91 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.06
SYNE1Q8NF91 DUX4L28-201ENST00000623687 678 ntBASIC8.4□□□□□ -1.07
SYNE1Q8NF91 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC8.4□□□□□ -1.07
SYNE1Q8NF91 MIR762-201ENST00000390236 83 ntBASIC8.4□□□□□ -1.07
SYNE1Q8NF91 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
SYNE1Q8NF91 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
SYNE1Q8NF91 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC8.38□□□□□ -1.07
SYNE1Q8NF91 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
SYNE1Q8NF91 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
SYNE1Q8NF91 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC8.38□□□□□ -1.07
SYNE1Q8NF91 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC8.37□□□□□ -1.07
SYNE1Q8NF91 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
SYNE1Q8NF91 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
SYNE1Q8NF91 ABHD17AP4-201ENST00000411545 909 ntBASIC8.37□□□□□ -1.07
SYNE1Q8NF91 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC8.37□□□□□ -1.07
SYNE1Q8NF91 PVT1-219ENST00000523427 938 ntTSL 3 BASIC8.37□□□□□ -1.07
SYNE1Q8NF91 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
SYNE1Q8NF91 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
SYNE1Q8NF91 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
SYNE1Q8NF91 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
SYNE1Q8NF91 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
SYNE1Q8NF91 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC8.36□□□□□ -1.07
SYNE1Q8NF91 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
SYNE1Q8NF91 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC8.36□□□□□ -1.07
SYNE1Q8NF91 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
SYNE1Q8NF91 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC8.35□□□□□ -1.07
SYNE1Q8NF91 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC8.35□□□□□ -1.07
SYNE1Q8NF91 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC8.35□□□□□ -1.07
SYNE1Q8NF91 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
SYNE1Q8NF91 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC8.34□□□□□ -1.07
SYNE1Q8NF91 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
SYNE1Q8NF91 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC8.33□□□□□ -1.08
SYNE1Q8NF91 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC8.33□□□□□ -1.08
SYNE1Q8NF91 HLA-V-202ENST00000446817 847 ntBASIC8.33□□□□□ -1.08
SYNE1Q8NF91 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC8.33□□□□□ -1.08
SYNE1Q8NF91 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC8.33□□□□□ -1.08
SYNE1Q8NF91 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC8.32□□□□□ -1.08
SYNE1Q8NF91 AC087741.3-201ENST00000624270 1347 ntBASIC8.32□□□□□ -1.08
SYNE1Q8NF91 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC8.32□□□□□ -1.08
SYNE1Q8NF91 MIR7108-201ENST00000614319 87 ntBASIC8.32□□□□□ -1.08
SYNE1Q8NF91 EBPL-202ENST00000378268 680 ntTSL 3 BASIC8.32□□□□□ -1.08
SYNE1Q8NF91 MLEC-202ENST00000412616 841 ntTSL 3 BASIC8.32□□□□□ -1.08
SYNE1Q8NF91 CHML-205ENST00000638160 705 ntTSL 3 BASIC8.32□□□□□ -1.08
SYNE1Q8NF91 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC8.31□□□□□ -1.08
SYNE1Q8NF91 MBP-237ENST00000579129 1052 ntTSL 5 BASIC8.31□□□□□ -1.08
SYNE1Q8NF91 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC8.31□□□□□ -1.08
SYNE1Q8NF91 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC8.31□□□□□ -1.08
SYNE1Q8NF91 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
SYNE1Q8NF91 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC8.3□□□□□ -1.08
SYNE1Q8NF91 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC8.3□□□□□ -1.08
SYNE1Q8NF91 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC8.3□□□□□ -1.08
SYNE1Q8NF91 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC8.3□□□□□ -1.08
SYNE1Q8NF91 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC8.3□□□□□ -1.08
SYNE1Q8NF91 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC8.3□□□□□ -1.08
SYNE1Q8NF91 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC8.29□□□□□ -1.08
SYNE1Q8NF91 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC8.29□□□□□ -1.08
SYNE1Q8NF91 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC8.29□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms