Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
DEPDC4Q8N2C3 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC25.62■■□□□ 1.69
DEPDC4Q8N2C3 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
DEPDC4Q8N2C3 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC25.61■■□□□ 1.69
DEPDC4Q8N2C3 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
DEPDC4Q8N2C3 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
DEPDC4Q8N2C3 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
DEPDC4Q8N2C3 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
DEPDC4Q8N2C3 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC25.57■■□□□ 1.68
DEPDC4Q8N2C3 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
DEPDC4Q8N2C3 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
DEPDC4Q8N2C3 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC25.49■■□□□ 1.67
DEPDC4Q8N2C3 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
DEPDC4Q8N2C3 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
DEPDC4Q8N2C3 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.47■■□□□ 1.67
DEPDC4Q8N2C3 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
DEPDC4Q8N2C3 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
DEPDC4Q8N2C3 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC25.46■■□□□ 1.67
DEPDC4Q8N2C3 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
DEPDC4Q8N2C3 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.44■■□□□ 1.66
DEPDC4Q8N2C3 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
DEPDC4Q8N2C3 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
DEPDC4Q8N2C3 AP002365.1-201ENST00000603448 772 ntBASIC25.43■■□□□ 1.66
DEPDC4Q8N2C3 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
DEPDC4Q8N2C3 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC25.42■■□□□ 1.66
DEPDC4Q8N2C3 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
DEPDC4Q8N2C3 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
DEPDC4Q8N2C3 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
DEPDC4Q8N2C3 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
DEPDC4Q8N2C3 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC25.37■■□□□ 1.65
DEPDC4Q8N2C3 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
DEPDC4Q8N2C3 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
DEPDC4Q8N2C3 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC25.36■■□□□ 1.65
DEPDC4Q8N2C3 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
DEPDC4Q8N2C3 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.35■■□□□ 1.65
DEPDC4Q8N2C3 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC25.34■■□□□ 1.65
DEPDC4Q8N2C3 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC25.34■■□□□ 1.65
DEPDC4Q8N2C3 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
DEPDC4Q8N2C3 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC25.33■■□□□ 1.65
DEPDC4Q8N2C3 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
DEPDC4Q8N2C3 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
DEPDC4Q8N2C3 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
DEPDC4Q8N2C3 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
DEPDC4Q8N2C3 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
DEPDC4Q8N2C3 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC25.27■■□□□ 1.64
DEPDC4Q8N2C3 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC25.27■■□□□ 1.64
DEPDC4Q8N2C3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
DEPDC4Q8N2C3 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
DEPDC4Q8N2C3 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
DEPDC4Q8N2C3 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
DEPDC4Q8N2C3 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC25.24■■□□□ 1.63
DEPDC4Q8N2C3 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
DEPDC4Q8N2C3 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC25.24■■□□□ 1.63
DEPDC4Q8N2C3 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC25.23■■□□□ 1.63
DEPDC4Q8N2C3 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC25.23■■□□□ 1.63
DEPDC4Q8N2C3 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
DEPDC4Q8N2C3 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC25.23■■□□□ 1.63
DEPDC4Q8N2C3 ABCB10P1-201ENST00000614297 2181 ntBASIC25.22■■□□□ 1.63
DEPDC4Q8N2C3 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC25.22■■□□□ 1.63
DEPDC4Q8N2C3 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.22■■□□□ 1.63
DEPDC4Q8N2C3 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.22■■□□□ 1.63
DEPDC4Q8N2C3 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC25.21■■□□□ 1.63
DEPDC4Q8N2C3 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC25.2■■□□□ 1.62
DEPDC4Q8N2C3 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
DEPDC4Q8N2C3 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC25.19■■□□□ 1.62
DEPDC4Q8N2C3 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
DEPDC4Q8N2C3 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
DEPDC4Q8N2C3 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC25.18■■□□□ 1.62
DEPDC4Q8N2C3 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
DEPDC4Q8N2C3 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
DEPDC4Q8N2C3 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
DEPDC4Q8N2C3 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
DEPDC4Q8N2C3 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
DEPDC4Q8N2C3 AC120057.4-201ENST00000624722 1615 ntBASIC25.15■■□□□ 1.62
DEPDC4Q8N2C3 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
DEPDC4Q8N2C3 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
DEPDC4Q8N2C3 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC25.15■■□□□ 1.62
DEPDC4Q8N2C3 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
DEPDC4Q8N2C3 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC25.13■■□□□ 1.61
DEPDC4Q8N2C3 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
DEPDC4Q8N2C3 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
DEPDC4Q8N2C3 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC25.12■■□□□ 1.61
DEPDC4Q8N2C3 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.12■■□□□ 1.61
DEPDC4Q8N2C3 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
DEPDC4Q8N2C3 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
DEPDC4Q8N2C3 ABCB10P3-201ENST00000561950 2166 ntBASIC25.1■■□□□ 1.61
DEPDC4Q8N2C3 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC25.1■■□□□ 1.61
DEPDC4Q8N2C3 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC25.1■■□□□ 1.61
DEPDC4Q8N2C3 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC25.1■■□□□ 1.61
DEPDC4Q8N2C3 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC25.09■■□□□ 1.61
DEPDC4Q8N2C3 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC25.09■■□□□ 1.61
DEPDC4Q8N2C3 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC25.08■■□□□ 1.61
DEPDC4Q8N2C3 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
DEPDC4Q8N2C3 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.6
DEPDC4Q8N2C3 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
DEPDC4Q8N2C3 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
DEPDC4Q8N2C3 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
DEPDC4Q8N2C3 DYNLL1-208ENST00000550178 581 ntBASIC25.07■■□□□ 1.6
DEPDC4Q8N2C3 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
DEPDC4Q8N2C3 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 12.5 ms