Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
CCDC144BQ3MJ40 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC32.3■■■□□ 2.76
CCDC144BQ3MJ40 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
CCDC144BQ3MJ40 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC32.3■■■□□ 2.76
CCDC144BQ3MJ40 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC32.29■■■□□ 2.76
CCDC144BQ3MJ40 SUZ12P1-203ENST00000578195 985 ntBASIC32.26■■■□□ 2.75
CCDC144BQ3MJ40 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC32.26■■■□□ 2.75
CCDC144BQ3MJ40 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
CCDC144BQ3MJ40 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC32.25■■■□□ 2.75
CCDC144BQ3MJ40 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.25■■■□□ 2.75
CCDC144BQ3MJ40 AC145285.7-201ENST00000614819 1539 ntBASIC32.23■■■□□ 2.75
CCDC144BQ3MJ40 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC32.23■■■□□ 2.75
CCDC144BQ3MJ40 ST7-202ENST00000323984 2142 ntTSL 5 BASIC32.22■■■□□ 2.75
CCDC144BQ3MJ40 ST7-207ENST00000393449 2127 ntTSL 5 BASIC32.22■■■□□ 2.75
CCDC144BQ3MJ40 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC32.22■■■□□ 2.75
CCDC144BQ3MJ40 MVK-208ENST00000539696 608 ntTSL 5 BASIC32.19■■■□□ 2.74
CCDC144BQ3MJ40 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC32.18■■■□□ 2.74
CCDC144BQ3MJ40 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC144BQ3MJ40 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC32.18■■■□□ 2.74
CCDC144BQ3MJ40 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC144BQ3MJ40 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC32.16■■■□□ 2.74
CCDC144BQ3MJ40 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC32.15■■■□□ 2.74
CCDC144BQ3MJ40 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
CCDC144BQ3MJ40 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC32.13■■■□□ 2.73
CCDC144BQ3MJ40 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC144BQ3MJ40 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
CCDC144BQ3MJ40 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC32.09■■■□□ 2.73
CCDC144BQ3MJ40 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC32.08■■■□□ 2.73
CCDC144BQ3MJ40 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC32.08■■■□□ 2.73
CCDC144BQ3MJ40 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
CCDC144BQ3MJ40 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CCDC144BQ3MJ40 RPS2P35-201ENST00000443417 897 ntBASIC32.03■■■□□ 2.72
CCDC144BQ3MJ40 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC32.03■■■□□ 2.72
CCDC144BQ3MJ40 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC32.02■■■□□ 2.72
CCDC144BQ3MJ40 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC32.01■■■□□ 2.72
CCDC144BQ3MJ40 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
CCDC144BQ3MJ40 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.71
CCDC144BQ3MJ40 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC31.99■■■□□ 2.71
CCDC144BQ3MJ40 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC31.99■■■□□ 2.71
CCDC144BQ3MJ40 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CCDC144BQ3MJ40 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.97■■■□□ 2.71
CCDC144BQ3MJ40 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
CCDC144BQ3MJ40 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
CCDC144BQ3MJ40 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC31.96■■■□□ 2.71
CCDC144BQ3MJ40 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
CCDC144BQ3MJ40 CAHM-201ENST00000604200 896 ntBASIC31.95■■■□□ 2.71
CCDC144BQ3MJ40 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.93■■■□□ 2.7
CCDC144BQ3MJ40 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
CCDC144BQ3MJ40 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC31.9■■■□□ 2.7
CCDC144BQ3MJ40 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC31.9■■■□□ 2.7
CCDC144BQ3MJ40 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.89■■■□□ 2.7
CCDC144BQ3MJ40 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.89■■■□□ 2.7
CCDC144BQ3MJ40 PDXP-201ENST00000215904 2010 ntAPPRIS P1 TSL 1 (best) BASIC31.88■■■□□ 2.69
CCDC144BQ3MJ40 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.88■■■□□ 2.69
CCDC144BQ3MJ40 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CCDC144BQ3MJ40 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.85■■■□□ 2.69
CCDC144BQ3MJ40 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
CCDC144BQ3MJ40 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.84■■■□□ 2.69
CCDC144BQ3MJ40 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.83■■■□□ 2.69
CCDC144BQ3MJ40 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.82■■■□□ 2.68
CCDC144BQ3MJ40 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC144BQ3MJ40 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC144BQ3MJ40 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC144BQ3MJ40 AL133380.1-201ENST00000506013 324 ntBASIC31.79■■■□□ 2.68
CCDC144BQ3MJ40 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CCDC144BQ3MJ40 AL391121.1-201ENST00000607967 1349 ntBASIC31.78■■■□□ 2.68
CCDC144BQ3MJ40 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.78■■■□□ 2.68
CCDC144BQ3MJ40 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
CCDC144BQ3MJ40 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
CCDC144BQ3MJ40 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.74■■■□□ 2.67
CCDC144BQ3MJ40 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.73■■■□□ 2.67
CCDC144BQ3MJ40 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
CCDC144BQ3MJ40 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.71■■■□□ 2.67
CCDC144BQ3MJ40 AL162393.1-201ENST00000437852 946 ntBASIC31.69■■■□□ 2.66
CCDC144BQ3MJ40 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.67■■■□□ 2.66
CCDC144BQ3MJ40 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
CCDC144BQ3MJ40 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC144BQ3MJ40 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.65■■■□□ 2.66
CCDC144BQ3MJ40 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC144BQ3MJ40 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC144BQ3MJ40 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CCDC144BQ3MJ40 AP006261.1-201ENST00000584783 668 ntBASIC31.63■■■□□ 2.65
CCDC144BQ3MJ40 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CCDC144BQ3MJ40 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.62■■■□□ 2.65
CCDC144BQ3MJ40 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CCDC144BQ3MJ40 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC31.62■■■□□ 2.65
CCDC144BQ3MJ40 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC144BQ3MJ40 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC144BQ3MJ40 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC144BQ3MJ40 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.6■■■□□ 2.65
CCDC144BQ3MJ40 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC144BQ3MJ40 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC31.59■■■□□ 2.65
CCDC144BQ3MJ40 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC144BQ3MJ40 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC144BQ3MJ40 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.58■■■□□ 2.65
CCDC144BQ3MJ40 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC31.57■■■□□ 2.64
CCDC144BQ3MJ40 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.57■■■□□ 2.64
CCDC144BQ3MJ40 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
CCDC144BQ3MJ40 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC144BQ3MJ40 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC31.56■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms