Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DQA1P01909 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HLA-DQA1P01909 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC20.95■□□□□ 0.94
HLA-DQA1P01909 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC20.95■□□□□ 0.94
HLA-DQA1P01909 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HLA-DQA1P01909 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HLA-DQA1P01909 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HLA-DQA1P01909 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HLA-DQA1P01909 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HLA-DQA1P01909 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HLA-DQA1P01909 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC20.92■□□□□ 0.94
HLA-DQA1P01909 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
HLA-DQA1P01909 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HLA-DQA1P01909 SHF-206ENST00000560471 2499 ntTSL 5 BASIC20.9■□□□□ 0.94
HLA-DQA1P01909 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HLA-DQA1P01909 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
HLA-DQA1P01909 AC139426.1-201ENST00000568218 2529 ntBASIC20.89■□□□□ 0.93
HLA-DQA1P01909 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DQA1P01909 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HLA-DQA1P01909 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DQA1P01909 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.86■□□□□ 0.93
HLA-DQA1P01909 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
HLA-DQA1P01909 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DQA1P01909 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DQA1P01909 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
HLA-DQA1P01909 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DQA1P01909 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DQA1P01909 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC20.85■□□□□ 0.93
HLA-DQA1P01909 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
HLA-DQA1P01909 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
HLA-DQA1P01909 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
HLA-DQA1P01909 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
HLA-DQA1P01909 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC20.83■□□□□ 0.92
HLA-DQA1P01909 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC20.82■□□□□ 0.92
HLA-DQA1P01909 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
HLA-DQA1P01909 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC20.81■□□□□ 0.92
HLA-DQA1P01909 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC20.8■□□□□ 0.92
HLA-DQA1P01909 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
HLA-DQA1P01909 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HLA-DQA1P01909 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
HLA-DQA1P01909 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
HLA-DQA1P01909 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
HLA-DQA1P01909 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
HLA-DQA1P01909 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
HLA-DQA1P01909 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
HLA-DQA1P01909 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC20.74■□□□□ 0.91
HLA-DQA1P01909 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
HLA-DQA1P01909 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC20.73■□□□□ 0.91
HLA-DQA1P01909 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DQA1P01909 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
HLA-DQA1P01909 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
HLA-DQA1P01909 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
HLA-DQA1P01909 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HLA-DQA1P01909 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HLA-DQA1P01909 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HLA-DQA1P01909 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HLA-DQA1P01909 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DQA1P01909 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
HLA-DQA1P01909 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DQA1P01909 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DQA1P01909 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DQA1P01909 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HLA-DQA1P01909 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC20.64■□□□□ 0.9
HLA-DQA1P01909 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DQA1P01909 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
HLA-DQA1P01909 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC20.63■□□□□ 0.89
HLA-DQA1P01909 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
HLA-DQA1P01909 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
HLA-DQA1P01909 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
HLA-DQA1P01909 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DQA1P01909 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
HLA-DQA1P01909 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
HLA-DQA1P01909 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
HLA-DQA1P01909 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC20.59■□□□□ 0.89
HLA-DQA1P01909 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
HLA-DQA1P01909 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
HLA-DQA1P01909 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DQA1P01909 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
HLA-DQA1P01909 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DQA1P01909 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
HLA-DQA1P01909 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC20.56■□□□□ 0.88
HLA-DQA1P01909 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC20.55■□□□□ 0.88
HLA-DQA1P01909 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DQA1P01909 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
HLA-DQA1P01909 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DQA1P01909 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
HLA-DQA1P01909 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
HLA-DQA1P01909 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HLA-DQA1P01909 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC20.51■□□□□ 0.87
HLA-DQA1P01909 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DQA1P01909 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
HLA-DQA1P01909 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC20.48■□□□□ 0.87
HLA-DQA1P01909 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HLA-DQA1P01909 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
HLA-DQA1P01909 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
HLA-DQA1P01909 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DQA1P01909 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DQA1P01909 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HLA-DQA1P01909 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HLA-DQA1P01909 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 8.8 ms