Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 AC087741.3-201ENST00000624270 1347 ntBASIC32.86■■■□□ 2.85
CCDC85CA6NKD9 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
CCDC85CA6NKD9 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC32.83■■■□□ 2.85
CCDC85CA6NKD9 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
CCDC85CA6NKD9 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
CCDC85CA6NKD9 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC85CA6NKD9 ZNRF2P2-203ENST00000454624 420 ntBASIC32.8■■■□□ 2.84
CCDC85CA6NKD9 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC85CA6NKD9 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32.79■■■□□ 2.84
CCDC85CA6NKD9 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
CCDC85CA6NKD9 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC32.77■■■□□ 2.84
CCDC85CA6NKD9 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC32.75■■■□□ 2.83
CCDC85CA6NKD9 AC044849.2-201ENST00000606596 710 ntBASIC32.75■■■□□ 2.83
CCDC85CA6NKD9 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC85CA6NKD9 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC32.7■■■□□ 2.83
CCDC85CA6NKD9 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC32.7■■■□□ 2.83
CCDC85CA6NKD9 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
CCDC85CA6NKD9 RPS2-202ENST00000526522 924 ntTSL 2 BASIC32.69■■■□□ 2.82
CCDC85CA6NKD9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC32.68■■■□□ 2.82
CCDC85CA6NKD9 MIR4449-201ENST00000578365 66 ntBASIC32.67■■■□□ 2.82
CCDC85CA6NKD9 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC32.65■■■□□ 2.82
CCDC85CA6NKD9 DUX4L28-201ENST00000623687 678 ntBASIC32.64■■■□□ 2.82
CCDC85CA6NKD9 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC32.62■■■□□ 2.81
CCDC85CA6NKD9 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
CCDC85CA6NKD9 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
CCDC85CA6NKD9 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC32.57■■■□□ 2.8
CCDC85CA6NKD9 HSD17B1P1-201ENST00000590052 955 ntBASIC32.56■■■□□ 2.8
CCDC85CA6NKD9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC32.55■■■□□ 2.8
CCDC85CA6NKD9 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC32.55■■■□□ 2.8
CCDC85CA6NKD9 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC32.53■■■□□ 2.8
CCDC85CA6NKD9 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC32.53■■■□□ 2.8
CCDC85CA6NKD9 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32.52■■■□□ 2.8
CCDC85CA6NKD9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC32.47■■■□□ 2.79
CCDC85CA6NKD9 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC32.46■■■□□ 2.79
CCDC85CA6NKD9 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC32.41■■■□□ 2.78
CCDC85CA6NKD9 BOD1-206ENST00000480951 814 ntTSL 2 BASIC32.41■■■□□ 2.78
CCDC85CA6NKD9 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC32.4■■■□□ 2.78
CCDC85CA6NKD9 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC32.39■■■□□ 2.78
CCDC85CA6NKD9 MIR639-201ENST00000384974 98 ntBASIC32.39■■■□□ 2.78
CCDC85CA6NKD9 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC32.38■■■□□ 2.77
CCDC85CA6NKD9 CALM3-209ENST00000597743 577 ntTSL 4 BASIC32.36■■■□□ 2.77
CCDC85CA6NKD9 CHML-205ENST00000638160 705 ntTSL 3 BASIC32.36■■■□□ 2.77
CCDC85CA6NKD9 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC32.35■■■□□ 2.77
CCDC85CA6NKD9 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC32.34■■■□□ 2.77
CCDC85CA6NKD9 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC32.34■■■□□ 2.77
CCDC85CA6NKD9 AL133380.1-201ENST00000506013 324 ntBASIC32.33■■■□□ 2.77
CCDC85CA6NKD9 AC005559.1-201ENST00000589661 871 ntBASIC32.33■■■□□ 2.77
CCDC85CA6NKD9 HGH1-207ENST00000628266 258 ntTSL 5 BASIC32.33■■■□□ 2.77
CCDC85CA6NKD9 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC32.33■■■□□ 2.77
CCDC85CA6NKD9 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC32.32■■■□□ 2.77
CCDC85CA6NKD9 MIR762-201ENST00000390236 83 ntBASIC32.28■■■□□ 2.76
CCDC85CA6NKD9 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
CCDC85CA6NKD9 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CCDC85CA6NKD9 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC32.27■■■□□ 2.76
CCDC85CA6NKD9 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CCDC85CA6NKD9 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.25■■■□□ 2.75
CCDC85CA6NKD9 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC32.24■■■□□ 2.75
CCDC85CA6NKD9 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC32.24■■■□□ 2.75
CCDC85CA6NKD9 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC32.22■■■□□ 2.75
CCDC85CA6NKD9 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC32.21■■■□□ 2.75
CCDC85CA6NKD9 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CCDC85CA6NKD9 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
CCDC85CA6NKD9 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.16■■■□□ 2.74
CCDC85CA6NKD9 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC32.15■■■□□ 2.74
CCDC85CA6NKD9 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC32.15■■■□□ 2.74
CCDC85CA6NKD9 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC32.14■■■□□ 2.74
CCDC85CA6NKD9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC32.11■■■□□ 2.73
CCDC85CA6NKD9 ABHD17AP3-201ENST00000503096 1137 ntBASIC32.1■■■□□ 2.73
CCDC85CA6NKD9 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC32.1■■■□□ 2.73
CCDC85CA6NKD9 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC32.08■■■□□ 2.73
CCDC85CA6NKD9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC32.08■■■□□ 2.73
CCDC85CA6NKD9 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC32.08■■■□□ 2.73
CCDC85CA6NKD9 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
CCDC85CA6NKD9 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.07■■■□□ 2.72
CCDC85CA6NKD9 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
CCDC85CA6NKD9 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC32.04■■■□□ 2.72
CCDC85CA6NKD9 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC32.03■■■□□ 2.72
CCDC85CA6NKD9 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.02■■■□□ 2.72
CCDC85CA6NKD9 MVK-208ENST00000539696 608 ntTSL 5 BASIC32.02■■■□□ 2.72
CCDC85CA6NKD9 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
CCDC85CA6NKD9 AC016575.1-201ENST00000607026 382 ntBASIC32■■■□□ 2.71
CCDC85CA6NKD9 DUX4L29-201ENST00000425409 679 ntBASIC31.99■■■□□ 2.71
CCDC85CA6NKD9 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC85CA6NKD9 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
CCDC85CA6NKD9 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC31.94■■■□□ 2.7
CCDC85CA6NKD9 MIR3648-2-201ENST00000581792 180 ntBASIC31.92■■■□□ 2.7
CCDC85CA6NKD9 MIR3648-1-201ENST00000615959 180 ntBASIC31.92■■■□□ 2.7
CCDC85CA6NKD9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC31.91■■■□□ 2.7
CCDC85CA6NKD9 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
CCDC85CA6NKD9 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC31.9■■■□□ 2.7
CCDC85CA6NKD9 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.7
CCDC85CA6NKD9 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.89■■■□□ 2.7
CCDC85CA6NKD9 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.88■■■□□ 2.69
CCDC85CA6NKD9 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.88■■■□□ 2.69
CCDC85CA6NKD9 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.87■■■□□ 2.69
CCDC85CA6NKD9 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
CCDC85CA6NKD9 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC31.83■■■□□ 2.69
CCDC85CA6NKD9 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC85CA6NKD9 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC85CA6NKD9 AC145285.7-201ENST00000614819 1539 ntBASIC31.81■■■□□ 2.68
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms