Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
RC3H1Q5TC82 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
RC3H1Q5TC82 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
RC3H1Q5TC82 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 S100PBP-203ENST00000373476 3320 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 LINC02486-201ENST00000604157 3000 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 AC012358.2-201ENST00000430010 1434 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 XAGE2-201ENST00000286049 618 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 RN7SKP255-201ENST00000363442 313 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 RN7SKP203-201ENST00000363618 332 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 RN7SKP71-201ENST00000364558 318 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 RNA5SP84-201ENST00000364740 107 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 7SK.1-201ENST00000365328 331 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 TGFA-206ENST00000445399 812 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 IGKV1OR-2-201ENST00000457995 350 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 CDC37P2-201ENST00000562287 1029 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 AC142381.4-201ENST00000566806 702 ntTSL 3 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 AC142086.5-201ENST00000567619 702 ntTSL 5 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 AC139100.2-201ENST00000616901 662 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 COMMD10-201ENST00000274458 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 CA6-205ENST00000480186 1493 ntTSL 2 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 AC097359.2-201ENST00000604992 2389 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 DDC-212ENST00000615193 1674 ntTSL 3 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 NFIC-211ENST00000641145 8399 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 AL031590.1-202ENST00000641466 1737 ntBASIC17.16■□□□□ 0.34
RC3H1Q5TC82 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
RC3H1Q5TC82 INCA1-201ENST00000355025 1383 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 HLA-DMB-258ENST00000418107 1397 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 MYC-206ENST00000613283 1365 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 CDKN1A-208ENST00000615513 2102 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 GAL3ST4-202ENST00000411994 1404 ntTSL 2 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 AL390755.1-201ENST00000623716 2027 ntBASIC17.15■□□□□ 0.34
RC3H1Q5TC82 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 AC131011.1-201ENST00000366134 672 ntTSL 3 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 IGHV3-11-201ENST00000390601 473 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 AL353653.1-201ENST00000452336 638 ntTSL 2 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 SPG20-AS1-203ENST00000493739 566 ntTSL 3 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 AC022784.6-202ENST00000523246 674 ntTSL 5 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 AC254633.1-201ENST00000606790 345 ntBASIC17.15■□□□□ 0.34
RC3H1Q5TC82 AC244517.3-201ENST00000616254 1235 ntBASIC17.15■□□□□ 0.34
RC3H1Q5TC82 GTF3A-209ENST00000640289 1098 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 DCDC2B-201ENST00000409358 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
RC3H1Q5TC82 AC144831.1-201ENST00000573312 2656 ntBASIC17.14■□□□□ 0.34
RC3H1Q5TC82 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 CICP16-201ENST00000502609 2813 ntBASIC17.14■□□□□ 0.33
RC3H1Q5TC82 FANCG-201ENST00000378643 2631 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 ZFHX4-AS1-201ENST00000518143 1711 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 PDZD11-201ENST00000239666 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 AL591499.1-201ENST00000307155 1153 ntBASIC17.14■□□□□ 0.33
RC3H1Q5TC82 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
RC3H1Q5TC82 KRTAP12-1-201ENST00000391617 588 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms