Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
SMARCA1P28370 THPO-203ENST00000445696 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMARCA1P28370 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMARCA1P28370 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
SMARCA1P28370 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
SMARCA1P28370 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMARCA1P28370 IL9RP3-201ENST00000442856 1674 ntBASIC15.92■□□□□ 0.14
SMARCA1P28370 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMARCA1P28370 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
SMARCA1P28370 LINC01285-204ENST00000634601 1947 ntTSL 5 BASIC15.92■□□□□ 0.14
SMARCA1P28370 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC15.92■□□□□ 0.14
SMARCA1P28370 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC15.91■□□□□ 0.14
SMARCA1P28370 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
SMARCA1P28370 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 PPP1R11-205ENST00000376772 1731 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 SAR1A-204ENST00000373241 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 GRIA3-208ENST00000620581 2991 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 TSEN2-202ENST00000402228 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 AC073548.1-201ENST00000624088 1882 ntBASIC15.91■□□□□ 0.14
SMARCA1P28370 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
SMARCA1P28370 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 MANEA-AS1-201ENST00000564541 2268 ntBASIC15.91■□□□□ 0.14
SMARCA1P28370 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 CHCHD7-202ENST00000355315 1535 ntTSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.91■□□□□ 0.14
SMARCA1P28370 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.91■□□□□ 0.14
SMARCA1P28370 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC15.91■□□□□ 0.14
SMARCA1P28370 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
SMARCA1P28370 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC15.91■□□□□ 0.14
SMARCA1P28370 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC15.91■□□□□ 0.14
SMARCA1P28370 HTATIP2-202ENST00000421577 886 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 AL359979.2-201ENST00000435108 613 ntTSL 3 BASIC15.91■□□□□ 0.14
SMARCA1P28370 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC15.91■□□□□ 0.14
SMARCA1P28370 AC018463.1-201ENST00000456674 917 ntBASIC15.91■□□□□ 0.14
SMARCA1P28370 AC233724.6-201ENST00000503184 1088 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
SMARCA1P28370 AP003398.1-201ENST00000531124 318 ntBASIC15.91■□□□□ 0.14
SMARCA1P28370 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 VENTXP3-201ENST00000546480 773 ntBASIC15.91■□□□□ 0.14
SMARCA1P28370 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 DLK1-205ENST00000556051 469 ntTSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC15.91■□□□□ 0.14
SMARCA1P28370 GUCY2EP-203ENST00000531117 1918 ntBASIC15.91■□□□□ 0.14
SMARCA1P28370 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC15.91■□□□□ 0.14
SMARCA1P28370 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
SMARCA1P28370 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 ITGB2-206ENST00000397852 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
SMARCA1P28370 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
SMARCA1P28370 CDH16-204ENST00000565796 2694 ntTSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC15.91■□□□□ 0.14
SMARCA1P28370 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
SMARCA1P28370 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.9■□□□□ 0.14
SMARCA1P28370 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
SMARCA1P28370 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
SMARCA1P28370 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC15.9■□□□□ 0.14
SMARCA1P28370 SLC39A6-204ENST00000590986 3003 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
SMARCA1P28370 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
SMARCA1P28370 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 DDC-214ENST00000622873 1839 ntTSL 3 BASIC15.9■□□□□ 0.14
SMARCA1P28370 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.9■□□□□ 0.14
SMARCA1P28370 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC15.9■□□□□ 0.14
SMARCA1P28370 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SMARCA1P28370 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 CRYGC-201ENST00000282141 629 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
SMARCA1P28370 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
SMARCA1P28370 FXNP2-201ENST00000411625 547 ntBASIC15.9■□□□□ 0.14
SMARCA1P28370 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC15.9■□□□□ 0.14
SMARCA1P28370 AP001628.2-201ENST00000420273 784 ntTSL 2 BASIC15.9■□□□□ 0.14
SMARCA1P28370 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC15.9■□□□□ 0.14
SMARCA1P28370 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC15.9■□□□□ 0.14
SMARCA1P28370 AC104784.1-201ENST00000473096 294 ntBASIC15.9■□□□□ 0.14
SMARCA1P28370 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC15.9■□□□□ 0.14
SMARCA1P28370 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 60.4 ms