Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 LINC02063-201ENST00000503415 566 ntTSL 4 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 AC132803.1-201ENST00000504204 493 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 LINC01154-201ENST00000548617 454 ntTSL 3 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 TRMT112P3-201ENST00000580149 358 ntBASIC16.4■□□□□ 0.22
TRIM47Q96LD4 MBP-238ENST00000580402 915 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 AL133467.4-201ENST00000602953 725 ntBASIC16.4■□□□□ 0.22
TRIM47Q96LD4 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 MRM2-201ENST00000242257 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 AC015688.4-201ENST00000580780 1647 ntBASIC16.4■□□□□ 0.22
TRIM47Q96LD4 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
TRIM47Q96LD4 MPZL1-203ENST00000392121 3421 ntTSL 2 BASIC16.39■□□□□ 0.22
TRIM47Q96LD4 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
TRIM47Q96LD4 THBD-201ENST00000377103 4109 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 UROS-201ENST00000368774 744 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 RBM4-207ENST00000506523 654 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 C12orf73-210ENST00000552940 685 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 AP001269.2-201ENST00000590055 379 ntTSL 3 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 AC008972.2-201ENST00000606587 494 ntBASIC16.39■□□□□ 0.21
TRIM47Q96LD4 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 AC090505.1-201ENST00000430515 1834 ntBASIC16.39■□□□□ 0.21
TRIM47Q96LD4 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 NUBPL-201ENST00000281081 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC16.39■□□□□ 0.21
TRIM47Q96LD4 RN7SL832P-201ENST00000607781 1756 ntBASIC16.38■□□□□ 0.21
TRIM47Q96LD4 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 MYMK-201ENST00000339996 818 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 SERBP1P2-201ENST00000436888 1164 ntBASIC16.38■□□□□ 0.21
TRIM47Q96LD4 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 VENTXP4-201ENST00000449029 958 ntBASIC16.38■□□□□ 0.21
TRIM47Q96LD4 TIMP1-205ENST00000456754 1095 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 OR2A1-AS1-210ENST00000496968 531 ntBASIC16.38■□□□□ 0.21
TRIM47Q96LD4 IGHV1-12-201ENST00000518307 205 ntBASIC16.38■□□□□ 0.21
TRIM47Q96LD4 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
TRIM47Q96LD4 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms