Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 UNQ6494-202ENST00000617436 2163 ntTSL 2 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 DNMT3L-204ENST00000628202 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 LINP1-201ENST00000417112 917 ntTSL 2 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 KRT18P4-201ENST00000422599 1288 ntBASIC16.41■□□□□ 0.22
HLA-DOAP06340 PSAT1P2-201ENST00000426107 972 ntBASIC16.41■□□□□ 0.22
HLA-DOAP06340 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 PTK2-225ENST00000520892 571 ntTSL 4 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 USB1-205ENST00000561743 1135 ntTSL 3 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 GOLGA8IP-202ENST00000611635 2100 ntBASIC16.41■□□□□ 0.22
HLA-DOAP06340 MIR6756-201ENST00000616240 63 ntBASIC16.41■□□□□ 0.22
HLA-DOAP06340 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 AL157996.1-201ENST00000624684 2299 ntBASIC16.41■□□□□ 0.22
HLA-DOAP06340 CERCAM-214ENST00000613052 1429 ntTSL 5 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 MINPP1-202ENST00000371996 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 NRADDP-202ENST00000641269 1585 ntBASIC16.41■□□□□ 0.22
HLA-DOAP06340 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.41■□□□□ 0.22
HLA-DOAP06340 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
HLA-DOAP06340 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 PPP1R32-201ENST00000338608 1535 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 NHP2-202ENST00000314397 599 ntTSL 2 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 COA6-203ENST00000366615 710 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 TTPAL-203ENST00000372906 1139 ntTSL 3 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 COPS7B-204ENST00000409091 806 ntTSL 5 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 FAM21EP-201ENST00000417804 985 ntBASIC16.4■□□□□ 0.22
HLA-DOAP06340 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 GALP-202ENST00000440823 889 ntTSL 5 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 KRT18P66-201ENST00000452970 1269 ntBASIC16.4■□□□□ 0.22
HLA-DOAP06340 GULOP-201ENST00000454030 748 ntBASIC16.4■□□□□ 0.22
HLA-DOAP06340 MRPL43-211ENST00000477279 903 ntTSL 2 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 FRMD4A-208ENST00000493380 1149 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 TPP1-209ENST00000528657 578 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 TREHP1-201ENST00000531328 465 ntBASIC16.4■□□□□ 0.22
HLA-DOAP06340 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 MIR8071-1-201ENST00000616769 65 ntBASIC16.4■□□□□ 0.22
HLA-DOAP06340 MIR8071-2-201ENST00000616772 65 ntBASIC16.4■□□□□ 0.22
HLA-DOAP06340 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 AL513477.1-201ENST00000602865 2407 ntBASIC16.4■□□□□ 0.22
HLA-DOAP06340 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 PLAT-211ENST00000524009 1613 ntTSL 2 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 EFHD1-207ENST00000611312 1490 ntTSL 5 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC16.4■□□□□ 0.22
HLA-DOAP06340 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
HLA-DOAP06340 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.22
HLA-DOAP06340 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC16.39■□□□□ 0.22
HLA-DOAP06340 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DOAP06340 MECP2-217ENST00000628176 1712 ntTSL 3 BASIC16.39■□□□□ 0.21
HLA-DOAP06340 SLC35C2-201ENST00000243896 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DOAP06340 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DOAP06340 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DOAP06340 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DOAP06340 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
HLA-DOAP06340 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DOAP06340 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DOAP06340 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC16.39■□□□□ 0.21
HLA-DOAP06340 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DOAP06340 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
HLA-DOAP06340 FMO6P-201ENST00000236166 1620 ntBASIC16.39■□□□□ 0.21
HLA-DOAP06340 PHLDB2-203ENST00000412622 5996 ntTSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms