Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 ADI1-201ENST00000327435 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 SMARCA5-201ENST00000283131 7923 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
LRFN1Q9P244 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
LRFN1Q9P244 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 AC004554.1-201ENST00000422830 1468 ntBASIC12.91□□□□□ -0.34
LRFN1Q9P244 ERCC1-208ENST00000589165 1453 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 AC020910.6-201ENST00000623084 1459 ntBASIC12.91□□□□□ -0.34
LRFN1Q9P244 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 ZNF354B-201ENST00000322434 2802 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 USP31-203ENST00000567975 2142 ntTSL 2 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 CSAG1-203ENST00000370291 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 CELP-201ENST00000411440 1249 ntTSL 5 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 CSNK1G2P1-201ENST00000442675 955 ntBASIC12.91□□□□□ -0.34
LRFN1Q9P244 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 LYPLA2P1-203ENST00000447689 696 ntBASIC12.91□□□□□ -0.34
LRFN1Q9P244 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 HINT1-205ENST00000508488 703 ntTSL 2 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 IGHV3-37-201ENST00000518544 340 ntBASIC12.91□□□□□ -0.34
LRFN1Q9P244 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 AC007952.4-201ENST00000573866 637 ntBASIC12.91□□□□□ -0.34
LRFN1Q9P244 RN7SL357P-201ENST00000581065 298 ntBASIC12.91□□□□□ -0.34
LRFN1Q9P244 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 AC005041.3-201ENST00000606287 649 ntBASIC12.91□□□□□ -0.34
LRFN1Q9P244 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 PLEKHN1-202ENST00000379409 2455 ntAPPRIS ALT2 TSL 2 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
LRFN1Q9P244 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
LRFN1Q9P244 KRT8P43-201ENST00000406052 1458 ntBASIC12.91□□□□□ -0.34
LRFN1Q9P244 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC12.9□□□□□ -0.34
LRFN1Q9P244 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 MAPK14-202ENST00000229795 4319 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
LRFN1Q9P244 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC12.9□□□□□ -0.34
LRFN1Q9P244 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 HERPUD1-203ENST00000379792 1782 ntTSL 5 BASIC12.9□□□□□ -0.34
LRFN1Q9P244 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 TNNT2-203ENST00000367315 1083 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
LRFN1Q9P244 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
LRFN1Q9P244 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
LRFN1Q9P244 RN7SL564P-201ENST00000496309 250 ntBASIC12.9□□□□□ -0.34
LRFN1Q9P244 PRR7-AS1-204ENST00000514846 543 ntTSL 2 BASIC12.9□□□□□ -0.34
LRFN1Q9P244 NAA40-205ENST00000539656 577 ntTSL 4 BASIC12.9□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms