Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 ZNF174-201ENST00000268655 2260 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 SC5D-202ENST00000392789 2258 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 AC025171.1-202ENST00000499871 2271 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
USP39Q53GS9 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.31□□□□□ -0.12
USP39Q53GS9 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.31□□□□□ -0.12
USP39Q53GS9 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
USP39Q53GS9 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC14.3□□□□□ -0.12
USP39Q53GS9 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.3□□□□□ -0.12
USP39Q53GS9 STAG3L2-201ENST00000426587 2130 ntTSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 KCNT1-209ENST00000490355 3708 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
USP39Q53GS9 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 CACNA1I-202ENST00000402142 10004 ntAPPRIS P4 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.3□□□□□ -0.12
USP39Q53GS9 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 CXCL12-201ENST00000343575 1857 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 AIF1L-205ENST00000372301 671 ntTSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC14.3□□□□□ -0.12
USP39Q53GS9 HOXB-AS3-206ENST00000474040 741 ntTSL 3 BASIC14.3□□□□□ -0.12
USP39Q53GS9 LINC02435-201ENST00000508291 584 ntTSL 3 BASIC14.3□□□□□ -0.12
USP39Q53GS9 CD164-210ENST00000512821 964 ntTSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 AC055811.3-201ENST00000584952 686 ntBASIC14.3□□□□□ -0.12
USP39Q53GS9 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC14.3□□□□□ -0.12
USP39Q53GS9 PGPEP1-203ENST00000595066 762 ntTSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 MIR6746-201ENST00000620971 63 ntBASIC14.3□□□□□ -0.12
USP39Q53GS9 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC14.3□□□□□ -0.12
USP39Q53GS9 CSAG3-203ENST00000638835 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 CSAG2-204ENST00000640702 793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 BEND3P1-201ENST00000421591 1944 ntBASIC14.3□□□□□ -0.12
USP39Q53GS9 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 SLCO2B1-217ENST00000532236 2593 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC14.3□□□□□ -0.12
USP39Q53GS9 SCAF11-203ENST00000395453 1336 ntAPPRIS ALT2 TSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC14.3□□□□□ -0.12
USP39Q53GS9 RFTN1-203ENST00000432519 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC14.3□□□□□ -0.12
USP39Q53GS9 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 TRMT10B-207ENST00000537911 2108 ntTSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 SLC4A1-206ENST00000631130 1433 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
USP39Q53GS9 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.3□□□□□ -0.12
USP39Q53GS9 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
USP39Q53GS9 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.29□□□□□ -0.12
USP39Q53GS9 CYP20A1-203ENST00000429815 1812 ntTSL 2 BASIC14.29□□□□□ -0.12
USP39Q53GS9 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.29□□□□□ -0.12
USP39Q53GS9 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
USP39Q53GS9 CBX3-201ENST00000337620 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 BVES-201ENST00000314641 5567 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
USP39Q53GS9 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC14.29□□□□□ -0.12
USP39Q53GS9 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC14.29□□□□□ -0.12
USP39Q53GS9 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC14.29□□□□□ -0.12
USP39Q53GS9 SERF2-206ENST00000409291 807 ntTSL 3 BASIC14.29□□□□□ -0.12
USP39Q53GS9 THRB-AS1-202ENST00000438096 702 ntTSL 3 BASIC14.29□□□□□ -0.12
USP39Q53GS9 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC14.29□□□□□ -0.12
USP39Q53GS9 CD59-210ENST00000528700 652 ntAPPRIS P2 TSL 2 BASIC14.29□□□□□ -0.12
USP39Q53GS9 FAM60A-207ENST00000542983 738 ntTSL 4 BASIC14.29□□□□□ -0.12
USP39Q53GS9 AC145285.5-201ENST00000562217 361 ntBASIC14.29□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms