Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AC130686.1-201ENST00000622936 2466 ntBASIC12.57□□□□□ -0.4
H3F3AP84243 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 CORO7-222ENST00000574025 2826 ntTSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 IL20RA-201ENST00000316649 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC12.57□□□□□ -0.4
H3F3AP84243 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 ADD3-202ENST00000356080 3081 ntAPPRIS P4 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 TBC1D3J-201ENST00000620719 1426 ntBASIC12.57□□□□□ -0.4
H3F3AP84243 DMBT1P1-203ENST00000636837 4628 ntBASIC12.57□□□□□ -0.4
H3F3AP84243 CR383656.2-201ENST00000548656 2254 ntBASIC12.57□□□□□ -0.4
H3F3AP84243 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 ZKSCAN7-201ENST00000273320 3477 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 SEMA4F-202ENST00000357877 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
H3F3AP84243 FMR1NB-201ENST00000370467 1021 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 GAPDH-203ENST00000396858 1292 ntTSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC12.57□□□□□ -0.4
H3F3AP84243 SLC25A24P2-201ENST00000415059 510 ntBASIC12.57□□□□□ -0.4
H3F3AP84243 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 TEX36-AS1-202ENST00000446081 749 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 IGHJ2P-201ENST00000454480 60 ntBASIC12.57□□□□□ -0.4
H3F3AP84243 AP000358.1-201ENST00000456260 156 ntBASIC12.57□□□□□ -0.4
H3F3AP84243 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC12.57□□□□□ -0.4
H3F3AP84243 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC12.57□□□□□ -0.4
H3F3AP84243 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC12.57□□□□□ -0.4
H3F3AP84243 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC12.57□□□□□ -0.4
H3F3AP84243 RN7SL665P-201ENST00000578793 300 ntBASIC12.57□□□□□ -0.4
H3F3AP84243 ELOF1-202ENST00000586120 658 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
H3F3AP84243 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC12.57□□□□□ -0.4
H3F3AP84243 TP53-221ENST00000615910 1149 ntTSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 KCNIP1-210ENST00000636734 1613 ntTSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 GPNMB-203ENST00000409458 1673 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC12.57□□□□□ -0.4
H3F3AP84243 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC12.57□□□□□ -0.4
H3F3AP84243 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
H3F3AP84243 ABCG1-203ENST00000361802 3034 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC12.56□□□□□ -0.4
H3F3AP84243 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC12.56□□□□□ -0.4
H3F3AP84243 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
H3F3AP84243 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
H3F3AP84243 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
H3F3AP84243 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC12.56□□□□□ -0.4
H3F3AP84243 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC12.56□□□□□ -0.4
H3F3AP84243 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 FMO6P-201ENST00000236166 1620 ntBASIC12.56□□□□□ -0.4
H3F3AP84243 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
H3F3AP84243 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC12.56□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms