Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 AL031713.1-201ENST00000564813 661 ntBASIC12.97□□□□□ -0.33
RFC3P40938 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
RFC3P40938 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 AC009560.1-201ENST00000620208 434 ntBASIC12.97□□□□□ -0.33
RFC3P40938 CMC2-224ENST00000630396 481 ntTSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
RFC3P40938 ORC6-201ENST00000219097 1628 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
RFC3P40938 ADAM12-201ENST00000368676 3313 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC12.97□□□□□ -0.33
RFC3P40938 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 SLC9A3P3-201ENST00000457608 2229 ntBASIC12.97□□□□□ -0.33
RFC3P40938 GNPNAT1-203ENST00000554230 2238 ntTSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 ADK-205ENST00000539909 1866 ntTSL 2 BASIC12.97□□□□□ -0.33
RFC3P40938 AC131212.3-201ENST00000624087 4219 ntBASIC12.97□□□□□ -0.33
RFC3P40938 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 DMAC1-201ENST00000358227 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 LINC02048-201ENST00000440556 1771 ntTSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
RFC3P40938 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
RFC3P40938 AGAP9-201ENST00000452145 2387 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC12.96□□□□□ -0.33
RFC3P40938 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
RFC3P40938 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC12.96□□□□□ -0.33
RFC3P40938 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
RFC3P40938 BPI-201ENST00000262865 1874 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC12.96□□□□□ -0.33
RFC3P40938 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 AL928921.2-201ENST00000641325 2442 ntBASIC12.96□□□□□ -0.33
RFC3P40938 SPDYE4-201ENST00000328794 923 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC12.96□□□□□ -0.33
RFC3P40938 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
RFC3P40938 IGHV4-39-201ENST00000390619 425 ntAPPRIS P1 BASIC12.96□□□□□ -0.33
RFC3P40938 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
RFC3P40938 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 AL109767.1-201ENST00000429450 564 ntTSL 4 BASIC12.96□□□□□ -0.33
RFC3P40938 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC12.96□□□□□ -0.33
RFC3P40938 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC12.96□□□□□ -0.33
RFC3P40938 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 POLD4-208ENST00000532830 904 ntTSL 3 BASIC12.96□□□□□ -0.33
RFC3P40938 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC12.96□□□□□ -0.33
RFC3P40938 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC12.96□□□□□ -0.33
RFC3P40938 SKA2-205ENST00000580541 689 ntTSL 3 BASIC12.96□□□□□ -0.33
RFC3P40938 AC104506.1-201ENST00000609247 429 ntBASIC12.96□□□□□ -0.33
RFC3P40938 AC073911.3-201ENST00000624401 631 ntBASIC12.96□□□□□ -0.33
RFC3P40938 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
RFC3P40938 PRDM16-206ENST00000511072 4282 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
RFC3P40938 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 EMILIN1-201ENST00000380320 3943 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC12.96□□□□□ -0.34
RFC3P40938 VWCE-202ENST00000335613 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 TMEM184B-202ENST00000361906 3611 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
RFC3P40938 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.34
RFC3P40938 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC12.96□□□□□ -0.34
RFC3P40938 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.34
RFC3P40938 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
RFC3P40938 SLC22A23-202ENST00000380302 2883 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 MBD1-225ENST00000591535 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 ANXA8L1-202ENST00000611655 1398 ntTSL 2 BASIC12.95□□□□□ -0.34
RFC3P40938 GTF2IRD1-202ENST00000424337 3077 ntAPPRIS ALT1 TSL 1 (best) BASIC12.95□□□□□ -0.34
RFC3P40938 HSPA8P5-201ENST00000456928 2069 ntBASIC12.95□□□□□ -0.34
RFC3P40938 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.95□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 68.1 ms