Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC3P19447 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC3P19447 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC3P19447 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC3P19447 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC16.33■□□□□ 0.2
ERCC3P19447 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC16.33■□□□□ 0.2
ERCC3P19447 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC3P19447 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC3P19447 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
ERCC3P19447 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC3P19447 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC3P19447 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC3P19447 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
ERCC3P19447 MRPS10-201ENST00000053468 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC3P19447 TMEM143-201ENST00000293261 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
ERCC3P19447 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC3P19447 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ERCC3P19447 MEFV-201ENST00000219596 3499 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 TBC1D1-201ENST00000261439 5700 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC3P19447 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
ERCC3P19447 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC3P19447 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC3P19447 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ERCC3P19447 AL391415.1-201ENST00000439844 400 ntTSL 3 BASIC16.32■□□□□ 0.2
ERCC3P19447 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC16.32■□□□□ 0.2
ERCC3P19447 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC16.32■□□□□ 0.2
ERCC3P19447 RN7SL396P-201ENST00000471086 295 ntBASIC16.32■□□□□ 0.2
ERCC3P19447 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC3P19447 CLN8-204ENST00000519254 1769 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ERCC3P19447 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC16.32■□□□□ 0.2
ERCC3P19447 AC079174.1-201ENST00000552486 312 ntTSL 3 BASIC16.32■□□□□ 0.2
ERCC3P19447 MAX-218ENST00000557746 571 ntTSL 4 BASIC16.32■□□□□ 0.2
ERCC3P19447 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC16.32■□□□□ 0.2
ERCC3P19447 AC010327.5-201ENST00000586923 3061 ntBASIC16.32■□□□□ 0.2
ERCC3P19447 AC005357.2-202ENST00000590507 1060 ntBASIC16.32■□□□□ 0.2
ERCC3P19447 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC16.32■□□□□ 0.2
ERCC3P19447 AC064801.2-201ENST00000625052 1303 ntBASIC16.32■□□□□ 0.2
ERCC3P19447 LINC00244-201ENST00000625073 613 ntBASIC16.32■□□□□ 0.2
ERCC3P19447 AL451007.2-201ENST00000632004 563 ntBASIC16.32■□□□□ 0.2
ERCC3P19447 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC16.32■□□□□ 0.2
ERCC3P19447 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC16.32■□□□□ 0.2
ERCC3P19447 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
ERCC3P19447 ELN-203ENST00000320492 2991 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
ERCC3P19447 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 ASPH-214ENST00000519234 2874 ntTSL 5 BASIC16.32■□□□□ 0.2
ERCC3P19447 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
ERCC3P19447 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
ERCC3P19447 DYDC2-204ENST00000372199 2254 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC3P19447 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 ABR-205ENST00000544583 5595 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC3P19447 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 NTN4-201ENST00000343702 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
ERCC3P19447 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC3P19447 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 AC021305.1-201ENST00000520656 1514 ntBASIC16.31■□□□□ 0.2
ERCC3P19447 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 AKR1C2-202ENST00000421196 1481 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ERCC3P19447 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
ERCC3P19447 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
ERCC3P19447 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC16.31■□□□□ 0.2
ERCC3P19447 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 BCAS2P2-201ENST00000425064 674 ntBASIC16.31■□□□□ 0.2
ERCC3P19447 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC3P19447 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC3P19447 RN7SL564P-201ENST00000496309 250 ntBASIC16.31■□□□□ 0.2
ERCC3P19447 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 NAA40-205ENST00000539656 577 ntTSL 4 BASIC16.31■□□□□ 0.2
ERCC3P19447 FO393412.1-201ENST00000619841 382 ntBASIC16.31■□□□□ 0.2
ERCC3P19447 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
ERCC3P19447 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC16.31■□□□□ 0.2
ERCC3P19447 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
ERCC3P19447 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 PRSS30P-203ENST00000476276 2855 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC3P19447 SPRY2-201ENST00000377102 2708 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC16.31■□□□□ 0.2
ERCC3P19447 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ERCC3P19447 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC3P19447 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
ERCC3P19447 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 94.2 ms