RNA–Protein interactions for RNA: ENST00000340437.8

CPSF7-201, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 1 (best) BASIC

Gene CPSF7, Length 3,695 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-201ENST00000340437 NISCHQ9Y2I1 1504 aa28.34■■■□□ 2.13
CPSF7-201ENST00000340437 SHROOM4Q9ULL8 1493 aa25.34■■□□□ 1.65
CPSF7-201ENST00000340437 SUPT5HO00267 1087 aaKnown RBP25.04■■□□□ 1.6
CPSF7-201ENST00000340437 DCAF8L2P0C7V8 631 aa25■■□□□ 1.59
CPSF7-201ENST00000340437 CHIC1Q5VXU3 224 aa24.01■■□□□ 1.43
CPSF7-201ENST00000340437 PCGF6Q9BYE7 350 aa23.93■■□□□ 1.42
CPSF7-201ENST00000340437 ZCCHC6Q5VYS8 1495 aaKnown RBP23.9■■□□□ 1.42
CPSF7-201ENST00000340437 MYO15BQ96JP2 1530 aa23.85■■□□□ 1.41
CPSF7-201ENST00000340437 HRCP23327 699 aa23.71■■□□□ 1.39
CPSF7-201ENST00000340437 LOC105371045A0A1W2PR82 267 aa23.68■■□□□ 1.38
CPSF7-201ENST00000340437 PPARGC1BQ86YN6 1023 aaKnown RBP23.62■■□□□ 1.37
CPSF7-201ENST00000340437 CCDC180Q9P1Z9 1646 aa23.51■■□□□ 1.35
CPSF7-201ENST00000340437 EHMT2Q96KQ7 1210 aa23.5■■□□□ 1.35
CPSF7-201ENST00000340437 FAM9AQ8IZU1 332 aaPredicted RBP23.29■■□□□ 1.32
CPSF7-201ENST00000340437 TRIM41Q8WV44 630 aa23.05■■□□□ 1.28
CPSF7-201ENST00000340437 TRIM26Q12899 539 aaPredicted RBP23.03■■□□□ 1.28
CPSF7-201ENST00000340437 DCAF1Q9Y4B6 1507 aa22.92■■□□□ 1.26
CPSF7-201ENST00000340437 SCRIBQ14160 1630 aa22.79■■□□□ 1.24
CPSF7-201ENST00000340437 RSF1Q96T23 1441 aaPredicted RBP22.71■■□□□ 1.23
CPSF7-201ENST00000340437 TTBK1Q5TCY1 1321 aaPredicted RBP22.67■■□□□ 1.22
CPSF7-201ENST00000340437 ABCC9O60706 1549 aa22.56■■□□□ 1.2
CPSF7-201ENST00000340437 ZEB1P37275 1124 aaPredicted RBP22.52■■□□□ 1.2
CPSF7-201ENST00000340437 RB1CC1Q8TDY2 1594 aa22.49■■□□□ 1.19
CPSF7-201ENST00000340437 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.43■■□□□ 1.18
CPSF7-201ENST00000340437 CECR2Q9BXF3 1484 aa22.41■■□□□ 1.18
CPSF7-201ENST00000340437 CCER1Q8TC90 406 aaPredicted RBP22.35■■□□□ 1.17
CPSF7-201ENST00000340437 MROH2BQ7Z745 1585 aa22.22■■□□□ 1.15
CPSF7-201ENST00000340437 SCAF1Q9H7N4 1312 aaKnown RBP22.16■■□□□ 1.14
CPSF7-201ENST00000340437 RANGAP1P46060 587 aaPredicted RBP22.14■■□□□ 1.13
CPSF7-201ENST00000340437 WIZO95785 1651 aa22.09■■□□□ 1.13
CPSF7-201ENST00000340437 UBTFP17480 764 aaKnown RBP22.08■■□□□ 1.13
CPSF7-201ENST00000340437 PABPN1Q86U42 306 aaKnown RBP eCLIP21.93■■□□□ 1.15e-8■■■□□ 16.1
CPSF7-201ENST00000340437 NACADO15069 1562 aa21.92■■□□□ 1.1
CPSF7-201ENST00000340437 DIEXFQ68CQ4 756 aaKnown RBP21.92■■□□□ 1.1
CPSF7-201ENST00000340437 ABCC8Q09428 1581 aa21.89■■□□□ 1.09
CPSF7-201ENST00000340437 NEUROD1Q13562 356 aa21.87■■□□□ 1.09
CPSF7-201ENST00000340437 YTHDC1Q96MU7 727 aaKnown RBP21.84■■□□□ 1.09
CPSF7-201ENST00000340437 CCDC88BA6NC98 1476 aa21.84■■□□□ 1.09
CPSF7-201ENST00000340437 HNRNPUL2Q1KMD3 747 aaKnown RBP21.84■■□□□ 1.09
CPSF7-201ENST00000340437 SOGA1O94964 1423 aa21.81■■□□□ 1.08
CPSF7-201ENST00000340437 ACIN1Q9UKV3 1341 aaKnown RBP21.79■■□□□ 1.08
CPSF7-201ENST00000340437 CSRNP3Q8WYN3 585 aa21.78■■□□□ 1.08
CPSF7-201ENST00000340437 GTF3C3Q9Y5Q9 886 aa21.76■■□□□ 1.07
CPSF7-201ENST00000340437 CEP162Q5TB80 1403 aa21.74■■□□□ 1.07
CPSF7-201ENST00000340437 CENPBP07199 599 aaPredicted RBP21.71■■□□□ 1.07
CPSF7-201ENST00000340437 BAZ1AQ9NRL2 1556 aaPredicted RBP21.7■■□□□ 1.06
CPSF7-201ENST00000340437 PELP1Q8IZL8 1130 aaKnown RBP21.7■■□□□ 1.06
CPSF7-201ENST00000340437 RUSC2Q8N2Y8 1516 aa21.69■■□□□ 1.06
CPSF7-201ENST00000340437 APLP2Q06481 763 aa21.61■■□□□ 1.05
CPSF7-201ENST00000340437 ZNF316A6NFI3 1004 aaPredicted RBP21.57■■□□□ 1.04
CPSF7-201ENST00000340437 TNIKQ9UKE5 1360 aa21.55■■□□□ 1.04
CPSF7-201ENST00000340437 TOP2AP11388 1531 aaKnown RBP21.53■■□□□ 1.04
CPSF7-201ENST00000340437 SMARCA2P51531 1590 aa21.48■■□□□ 1.03
CPSF7-201ENST00000340437 SMARCA4P51532 1647 aa21.47■■□□□ 1.03
CPSF7-201ENST00000340437 EIF4G1Q04637 1599 aaKnown RBP21.44■■□□□ 1.02
CPSF7-201ENST00000340437 MIER1Q8N108 512 aa21.44■■□□□ 1.02
CPSF7-201ENST00000340437 WRNQ14191 1432 aaPredicted RBP eCLIP21.43■■□□□ 1.02
CPSF7-201ENST00000340437 GOLGA3Q08378 1498 aa21.38■■□□□ 1.01
CPSF7-201ENST00000340437 ITGAEP38570 1179 aa21.33■■□□□ 1.01
CPSF7-201ENST00000340437 CLIP1P30622 1438 aa21.33■■□□□ 1.01
CPSF7-201ENST00000340437 EEA1Q15075 1411 aa21.3■■□□□ 1
CPSF7-201ENST00000340437 CEP164Q9UPV0 1460 aa21.2■□□□□ 0.98
CPSF7-201ENST00000340437 ATP1B4Q9UN42 357 aaPredicted RBP21.19■□□□□ 0.98
CPSF7-201ENST00000340437 RAPGEF2Q9Y4G8 1499 aa21.17■□□□□ 0.98
CPSF7-201ENST00000340437 UNC13AQ9UPW8 1703 aa21.15■□□□□ 0.98
CPSF7-201ENST00000340437 SYNJ1O43426 1573 aa21.14■□□□□ 0.97
CPSF7-201ENST00000340437 KANK4Q5T7N3 995 aaPredicted RBP21.11■□□□□ 0.97
CPSF7-201ENST00000340437 VPS8Q8N3P4 1428 aa21.1■□□□□ 0.97
CPSF7-201ENST00000340437 BAZ1BQ9UIG0 1483 aaKnown RBP21.08■□□□□ 0.96
CPSF7-201ENST00000340437 ATAD2BQ9ULI0 1458 aa21.01■□□□□ 0.95
CPSF7-201ENST00000340437 BICRAQ9NZM4 1560 aa20.99■□□□□ 0.95
CPSF7-201ENST00000340437 KIF21BO75037 1637 aa20.93■□□□□ 0.94
CPSF7-201ENST00000340437 P3H3Q8IVL6 736 aa20.92■□□□□ 0.94
CPSF7-201ENST00000340437 DHX57Q6P158 1386 aaKnown RBP20.87■□□□□ 0.93
CPSF7-201ENST00000340437 FAM50AQ14320 339 aaKnown RBP20.85■□□□□ 0.93
CPSF7-201ENST00000340437 HIRIP3Q9BW71 556 aaPredicted RBP20.82■□□□□ 0.92
CPSF7-201ENST00000340437 KCNH8Q96L42 1107 aa20.81■□□□□ 0.92
CPSF7-201ENST00000340437 BCANQ96GW7 911 aa20.81■□□□□ 0.92
CPSF7-201ENST00000340437 ARAP1Q96P48 1450 aa20.75■□□□□ 0.91
CPSF7-201ENST00000340437 SIN3AQ96ST3 1273 aa20.74■□□□□ 0.91
CPSF7-201ENST00000340437 DDX10Q13206 875 aaKnown RBP20.73■□□□□ 0.91
CPSF7-201ENST00000340437 SUPT16HQ9Y5B9 1047 aaKnown RBP20.73■□□□□ 0.91
CPSF7-201ENST00000340437 PEG3Q9GZU2 1588 aa20.72■□□□□ 0.91
CPSF7-201ENST00000340437 KIF27Q86VH2 1401 aa20.71■□□□□ 0.91
CPSF7-201ENST00000340437 CCNB3Q8WWL7 1395 aa20.71■□□□□ 0.91
CPSF7-201ENST00000340437 TOP2BQ02880 1626 aa20.68■□□□□ 0.9
CPSF7-201ENST00000340437 PRXQ9BXM0 1461 aa20.66■□□□□ 0.9
CPSF7-201ENST00000340437 CLSPNQ9HAW4 1339 aa20.66■□□□□ 0.9
CPSF7-201ENST00000340437 RAB3GAP2Q9H2M9 1393 aa20.62■□□□□ 0.89
CPSF7-201ENST00000340437 CUX1P39880 1505 aa20.6■□□□□ 0.89
CPSF7-201ENST00000340437 CUX2O14529 1486 aa20.58■□□□□ 0.89
CPSF7-201ENST00000340437 ARHGAP35Q9NRY4 1499 aa20.56■□□□□ 0.88
CPSF7-201ENST00000340437 MYT1Q01538 1121 aa20.55■□□□□ 0.88
CPSF7-201ENST00000340437 TRIM52Q96A61 297 aa20.55■□□□□ 0.88
CPSF7-201ENST00000340437 ARID3CA6NKF2 412 aa20.54■□□□□ 0.88
CPSF7-201ENST00000340437 FKBP8Q14318 412 aa20.54■□□□□ 0.88
CPSF7-201ENST00000340437 RRBP1Q9P2E9 1410 aaKnown RBP20.52■□□□□ 0.88
CPSF7-201ENST00000340437 ERICH3Q5RHP9 1530 aa20.52■□□□□ 0.87
CPSF7-201ENST00000340437 CARMIL1Q5VZK9 1371 aa20.5■□□□□ 0.87
CPSF7-201ENST00000340437 IGF1RP08069 1367 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms