Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 MIR193A-201ENST00000384882 88 ntBASIC15.19■□□□□ 0.02
LRCH3Q96II8 U73169.1-201ENST00000395152 367 ntBASIC15.19■□□□□ 0.02
LRCH3Q96II8 TPT1P9-201ENST00000413759 514 ntBASIC15.19■□□□□ 0.02
LRCH3Q96II8 AL591242.1-201ENST00000422284 343 ntTSL 2 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 PPP1R2P4-201ENST00000424051 595 ntBASIC15.19■□□□□ 0.02
LRCH3Q96II8 DMKN-211ENST00000436012 848 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 AC099343.1-201ENST00000513481 609 ntBASIC15.19■□□□□ 0.02
LRCH3Q96II8 TOB1-AS1-202ENST00000514358 690 ntTSL 5 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 AL162231.1-205ENST00000544078 338 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 AC007223.1-201ENST00000564076 572 ntTSL 3 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 LINC02081-201ENST00000586185 877 ntTSL 3 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 ZNF235-203ENST00000589248 532 ntTSL 3 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 AC009118.3-201ENST00000622896 873 ntBASIC15.19■□□□□ 0.02
LRCH3Q96II8 AL356094.1-201ENST00000624663 1212 ntBASIC15.19■□□□□ 0.02
LRCH3Q96II8 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 CRYZL1-205ENST00000399442 612 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 APOBEC3B-204ENST00000407298 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 WDR54-202ENST00000409791 854 ntTSL 3 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 RPSAP12-201ENST00000435879 888 ntBASIC15.18■□□□□ 0.02
LRCH3Q96II8 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 RASA3-IT1-201ENST00000454005 380 ntTSL 3 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 WWC2-208ENST00000508747 1216 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 AC073896.3-201ENST00000546789 437 ntTSL 5 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 LINC00643-202ENST00000553426 526 ntTSL 3 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 AC020892.1-201ENST00000559918 855 ntTSL 2 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 CR936218.2-201ENST00000574252 759 ntTSL 3 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 DSCAS-201ENST00000581836 553 ntTSL 4 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 AC008147.4-201ENST00000617570 1204 ntBASIC15.18■□□□□ 0.02
LRCH3Q96II8 AL157762.1-201ENST00000619612 415 ntBASIC15.18■□□□□ 0.02
LRCH3Q96II8 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC15.18■□□□□ 0.02
LRCH3Q96II8 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LRCH3Q96II8 OXGR1-204ENST00000543457 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 CRYM-202ENST00000543948 1400 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 NBPF3-205ENST00000454000 2133 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
LRCH3Q96II8 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.17■□□□□ 0.02
LRCH3Q96II8 PSG4-203ENST00000433626 1887 ntTSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms