Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CCDC117-205ENST00000448492 3937 ntTSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 EFHC1-230ENST00000637263 2089 ntTSL 5 BASIC12.09□□□□□ -0.47
SDCBPO00560 MSH2-206ENST00000543555 3024 ntTSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 PHLDB1-201ENST00000356063 5240 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 LSS-201ENST00000356396 2995 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 AL391647.1-201ENST00000395664 511 ntBASIC12.09□□□□□ -0.47
SDCBPO00560 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 AL136309.1-201ENST00000403917 691 ntBASIC12.09□□□□□ -0.47
SDCBPO00560 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC12.09□□□□□ -0.47
SDCBPO00560 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 AL035414.1-201ENST00000451327 857 ntBASIC12.09□□□□□ -0.47
SDCBPO00560 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 AP003171.2-201ENST00000528208 925 ntBASIC12.09□□□□□ -0.47
SDCBPO00560 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC12.09□□□□□ -0.47
SDCBPO00560 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC12.09□□□□□ -0.47
SDCBPO00560 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 KRT18P8-201ENST00000581937 1246 ntBASIC12.09□□□□□ -0.47
SDCBPO00560 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC12.09□□□□□ -0.47
SDCBPO00560 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC12.09□□□□□ -0.47
SDCBPO00560 ZACNP1-201ENST00000612259 710 ntBASIC12.09□□□□□ -0.47
SDCBPO00560 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC12.09□□□□□ -0.47
SDCBPO00560 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC12.09□□□□□ -0.47
SDCBPO00560 AC105233.6-201ENST00000642093 218 ntBASIC12.09□□□□□ -0.47
SDCBPO00560 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC12.09□□□□□ -0.47
SDCBPO00560 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 RCBTB2-205ENST00000544492 2622 ntTSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 NSF-201ENST00000398238 3983 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 TTC39A-216ENST00000530004 1780 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 TUBB8-206ENST00000568584 1790 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 NPHP3-ACAD11-201ENST00000471702 7784 ntTSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 C15orf39-207ENST00000567617 4249 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
SDCBPO00560 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 AC102953.2-201ENST00000609755 3026 ntBASIC12.09□□□□□ -0.47
SDCBPO00560 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC12.09□□□□□ -0.47
SDCBPO00560 AC009093.10-201ENST00000641956 1442 ntBASIC12.09□□□□□ -0.47
SDCBPO00560 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC12.09□□□□□ -0.47
SDCBPO00560 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 NAP1L1-201ENST00000261182 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 SPOCK2-201ENST00000317376 5328 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC12.09□□□□□ -0.47
SDCBPO00560 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 AL122018.1-201ENST00000446607 2310 ntBASIC12.09□□□□□ -0.47
SDCBPO00560 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 ATXN2L-205ENST00000395547 3981 ntAPPRIS P4 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 AHCYP2-201ENST00000430630 1300 ntBASIC12.09□□□□□ -0.47
SDCBPO00560 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 LRCH3-203ENST00000425562 2970 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
SDCBPO00560 AC005865.2-203ENST00000636557 2959 ntTSL 5 BASIC12.09□□□□□ -0.47
SDCBPO00560 TP73-201ENST00000346387 4854 ntTSL 5 BASIC12.09□□□□□ -0.47
SDCBPO00560 PTH2R-201ENST00000272847 2713 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 GATA2-201ENST00000341105 3367 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
SDCBPO00560 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.47
SDCBPO00560 SPIN3-245ENST00000640768 1722 ntTSL 5 BASIC12.08□□□□□ -0.47
SDCBPO00560 GULP1-207ENST00000409843 2643 ntAPPRIS ALT1 TSL 2 BASIC12.08□□□□□ -0.47
SDCBPO00560 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC12.08□□□□□ -0.47
SDCBPO00560 CTTN-201ENST00000301843 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.47
SDCBPO00560 SESN3-203ENST00000536441 9558 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.47
SDCBPO00560 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 MKX-201ENST00000375790 3846 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 AC144450.1-201ENST00000366424 1641 ntTSL 2 BASIC12.08□□□□□ -0.48
SDCBPO00560 NME1-209ENST00000511355 1645 ntTSL 5 BASIC12.08□□□□□ -0.48
SDCBPO00560 CCDC117-201ENST00000249064 3985 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 PPP1R1B-203ENST00000394267 1504 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC12.08□□□□□ -0.48
SDCBPO00560 AC092171.2-201ENST00000444210 3251 ntTSL 5 BASIC12.08□□□□□ -0.48
SDCBPO00560 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 AC006001.1-201ENST00000325130 474 ntBASIC12.08□□□□□ -0.48
SDCBPO00560 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC12.08□□□□□ -0.48
SDCBPO00560 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
SDCBPO00560 PTPA-215ENST00000432124 567 ntTSL 4 BASIC12.08□□□□□ -0.48
SDCBPO00560 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC12.08□□□□□ -0.48
SDCBPO00560 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
SDCBPO00560 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC12.08□□□□□ -0.48
SDCBPO00560 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC12.08□□□□□ -0.48
SDCBPO00560 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC12.08□□□□□ -0.48
SDCBPO00560 AL136301.1-201ENST00000615830 422 ntBASIC12.08□□□□□ -0.48
SDCBPO00560 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC12.08□□□□□ -0.48
SDCBPO00560 RHOXF1P1-202ENST00000635473 501 ntBASIC12.08□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms