RNA–Protein interactions for RNA: ENST00000372633.1

RAB40A-202, Transcript of RAB40A, member RAS oncogene family, humanhuman

APPRIS P1 BASIC

Gene RAB40A, Length 3,126 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB40A-202ENST00000372633 NISCHQ9Y2I1 1504 aa27.43■■□□□ 1.98
RAB40A-202ENST00000372633 SHROOM4Q9ULL8 1493 aa23.5■■□□□ 1.35
RAB40A-202ENST00000372633 ZCCHC6Q5VYS8 1495 aaKnown RBP23.3■■□□□ 1.32
RAB40A-202ENST00000372633 SUPT5HO00267 1087 aaKnown RBP23.24■■□□□ 1.31
RAB40A-202ENST00000372633 CCDC180Q9P1Z9 1646 aa23.18■■□□□ 1.3
RAB40A-202ENST00000372633 MYO15BQ96JP2 1530 aa22.97■■□□□ 1.27
RAB40A-202ENST00000372633 HRCP23327 699 aa22.97■■□□□ 1.27
RAB40A-202ENST00000372633 CHIC1Q5VXU3 224 aa22.93■■□□□ 1.26
RAB40A-202ENST00000372633 DCAF1Q9Y4B6 1507 aa22.58■■□□□ 1.21
RAB40A-202ENST00000372633 PCGF6Q9BYE7 350 aa22.57■■□□□ 1.2
RAB40A-202ENST00000372633 DCAF8L2P0C7V8 631 aa22.36■■□□□ 1.17
RAB40A-202ENST00000372633 PPARGC1BQ86YN6 1023 aaKnown RBP22.31■■□□□ 1.16
RAB40A-202ENST00000372633 LOC105371045A0A1W2PR82 267 aa22.2■■□□□ 1.14
RAB40A-202ENST00000372633 TRIM26Q12899 539 aaPredicted RBP22.13■■□□□ 1.13
RAB40A-202ENST00000372633 ABCC9O60706 1549 aa22.07■■□□□ 1.12
RAB40A-202ENST00000372633 ZEB1P37275 1124 aaPredicted RBP21.86■■□□□ 1.09
RAB40A-202ENST00000372633 RSF1Q96T23 1441 aaPredicted RBP21.85■■□□□ 1.09
RAB40A-202ENST00000372633 RB1CC1Q8TDY2 1594 aa21.72■■□□□ 1.07
RAB40A-202ENST00000372633 TRIM41Q8WV44 630 aa21.67■■□□□ 1.06
RAB40A-202ENST00000372633 SCRIBQ14160 1630 aa21.67■■□□□ 1.06
RAB40A-202ENST00000372633 PELP1Q8IZL8 1130 aaKnown RBP21.55■■□□□ 1.04
RAB40A-202ENST00000372633 FAM9AQ8IZU1 332 aaPredicted RBP21.42■■□□□ 1.02
RAB40A-202ENST00000372633 SCAF1Q9H7N4 1312 aaKnown RBP21.4■■□□□ 1.02
RAB40A-202ENST00000372633 MROH2BQ7Z745 1585 aa21.32■■□□□ 1
RAB40A-202ENST00000372633 CECR2Q9BXF3 1484 aa21.32■■□□□ 1
RAB40A-202ENST00000372633 NACADO15069 1562 aa21.29■■□□□ 1
RAB40A-202ENST00000372633 WIZO95785 1651 aa21.23■□□□□ 0.99
RAB40A-202ENST00000372633 EIF4G1Q04637 1599 aaKnown RBP21.22■□□□□ 0.99
RAB40A-202ENST00000372633 BAZ1AQ9NRL2 1556 aaPredicted RBP21.18■□□□□ 0.98
RAB40A-202ENST00000372633 EHMT2Q96KQ7 1210 aa21.15■□□□□ 0.98
RAB40A-202ENST00000372633 WRNQ14191 1432 aaPredicted RBP eCLIP21.07■□□□□ 0.96
RAB40A-202ENST00000372633 ACIN1Q9UKV3 1341 aaKnown RBP21.07■□□□□ 0.96
RAB40A-202ENST00000372633 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.07■□□□□ 0.96
RAB40A-202ENST00000372633 CCER1Q8TC90 406 aaPredicted RBP21.04■□□□□ 0.96
RAB40A-202ENST00000372633 NEUROD1Q13562 356 aa20.97■□□□□ 0.95
RAB40A-202ENST00000372633 TOP2AP11388 1531 aaKnown RBP20.93■□□□□ 0.94
RAB40A-202ENST00000372633 DIEXFQ68CQ4 756 aaKnown RBP20.92■□□□□ 0.94
RAB40A-202ENST00000372633 CCDC88BA6NC98 1476 aa20.88■□□□□ 0.93
RAB40A-202ENST00000372633 CEP162Q5TB80 1403 aa20.88■□□□□ 0.93
RAB40A-202ENST00000372633 ABCC8Q09428 1581 aa20.87■□□□□ 0.93
RAB40A-202ENST00000372633 TNIKQ9UKE5 1360 aa20.85■□□□□ 0.93
RAB40A-202ENST00000372633 CENPBP07199 599 aaPredicted RBP20.85■□□□□ 0.93
RAB40A-202ENST00000372633 SMARCA2P51531 1590 aa20.83■□□□□ 0.92
RAB40A-202ENST00000372633 SMARCA4P51532 1647 aa20.8■□□□□ 0.92
RAB40A-202ENST00000372633 EEA1Q15075 1411 aa20.8■□□□□ 0.92
RAB40A-202ENST00000372633 GTF3C3Q9Y5Q9 886 aa20.78■□□□□ 0.92
RAB40A-202ENST00000372633 SOGA1O94964 1423 aa20.76■□□□□ 0.91
RAB40A-202ENST00000372633 ZNF316A6NFI3 1004 aaPredicted RBP20.68■□□□□ 0.9
RAB40A-202ENST00000372633 CSRNP3Q8WYN3 585 aa20.67■□□□□ 0.9
RAB40A-202ENST00000372633 GOLGA3Q08378 1498 aa20.64■□□□□ 0.89
RAB40A-202ENST00000372633 RUSC2Q8N2Y8 1516 aa20.64■□□□□ 0.89
RAB40A-202ENST00000372633 MYT1Q01538 1121 aa20.61■□□□□ 0.89
RAB40A-202ENST00000372633 TTBK1Q5TCY1 1321 aaPredicted RBP20.6■□□□□ 0.89
RAB40A-202ENST00000372633 UNC13AQ9UPW8 1703 aa20.6■□□□□ 0.89
RAB40A-202ENST00000372633 UBTFP17480 764 aaKnown RBP20.55■□□□□ 0.88
RAB40A-202ENST00000372633 KIF21BO75037 1637 aa20.52■□□□□ 0.88
RAB40A-202ENST00000372633 CEP164Q9UPV0 1460 aa20.48■□□□□ 0.87
RAB40A-202ENST00000372633 PEG3Q9GZU2 1588 aa20.45■□□□□ 0.86
RAB40A-202ENST00000372633 MIER1Q8N108 512 aa20.41■□□□□ 0.86
RAB40A-202ENST00000372633 SYNJ1O43426 1573 aa20.4■□□□□ 0.86
RAB40A-202ENST00000372633 VPS8Q8N3P4 1428 aa20.4■□□□□ 0.86
RAB40A-202ENST00000372633 BAZ1BQ9UIG0 1483 aaKnown RBP20.39■□□□□ 0.85
RAB40A-202ENST00000372633 CLIP1P30622 1438 aa20.38■□□□□ 0.85
RAB40A-202ENST00000372633 HNRNPUL2Q1KMD3 747 aaKnown RBP20.33■□□□□ 0.85
RAB40A-202ENST00000372633 YTHDC1Q96MU7 727 aaKnown RBP20.33■□□□□ 0.84
RAB40A-202ENST00000372633 BICRAQ9NZM4 1560 aa20.29■□□□□ 0.84
RAB40A-202ENST00000372633 CLSPNQ9HAW4 1339 aa20.25■□□□□ 0.83
RAB40A-202ENST00000372633 RAPGEF2Q9Y4G8 1499 aa20.24■□□□□ 0.83
RAB40A-202ENST00000372633 APLP2Q06481 763 aa20.19■□□□□ 0.82
RAB40A-202ENST00000372633 TOP2BQ02880 1626 aa20.15■□□□□ 0.82
RAB40A-202ENST00000372633 ATAD2BQ9ULI0 1458 aa20.14■□□□□ 0.81
RAB40A-202ENST00000372633 DHX57Q6P158 1386 aaKnown RBP20.13■□□□□ 0.81
RAB40A-202ENST00000372633 ERICH3Q5RHP9 1530 aa20.12■□□□□ 0.81
RAB40A-202ENST00000372633 BIVM-ERCC5R4GMW8 1640 aa20.09■□□□□ 0.81
RAB40A-202ENST00000372633 PABPN1Q86U42 306 aaKnown RBP eCLIP20.06■□□□□ 0.8
RAB40A-202ENST00000372633 PRXQ9BXM0 1461 aa20.06■□□□□ 0.8
RAB40A-202ENST00000372633 ARAP1Q96P48 1450 aa20.05■□□□□ 0.8
RAB40A-202ENST00000372633 CUX2O14529 1486 aa20.03■□□□□ 0.8
RAB40A-202ENST00000372633 RRBP1Q9P2E9 1410 aaKnown RBP20.02■□□□□ 0.8
RAB40A-202ENST00000372633 SUPT16HQ9Y5B9 1047 aaKnown RBP19.96■□□□□ 0.79
RAB40A-202ENST00000372633 KANK4Q5T7N3 995 aaPredicted RBP19.93■□□□□ 0.78
RAB40A-202ENST00000372633 RANGAP1P46060 587 aaPredicted RBP19.91■□□□□ 0.78
RAB40A-202ENST00000372633 CCNB3Q8WWL7 1395 aa19.85■□□□□ 0.77
RAB40A-202ENST00000372633 CUX1P39880 1505 aa19.82■□□□□ 0.76
RAB40A-202ENST00000372633 KIF27Q86VH2 1401 aa19.81■□□□□ 0.76
RAB40A-202ENST00000372633 ARHGAP35Q9NRY4 1499 aa19.81■□□□□ 0.76
RAB40A-202ENST00000372633 MAPKBP1O60336 1514 aa19.77■□□□□ 0.76
RAB40A-202ENST00000372633 MAP3K1Q13233 1512 aa19.76■□□□□ 0.75
RAB40A-202ENST00000372633 TSHZ2Q9NRE2 1034 aa19.76■□□□□ 0.75
RAB40A-202ENST00000372633 HMGXB3Q12766 1538 aa19.75■□□□□ 0.75
RAB40A-202ENST00000372633 RAB3GAP2Q9H2M9 1393 aa19.71■□□□□ 0.75
RAB40A-202ENST00000372633 NCAPD3P42695 1498 aa19.7■□□□□ 0.74
RAB40A-202ENST00000372633 TIAM1Q13009 1591 aa19.69■□□□□ 0.74
RAB40A-202ENST00000372633 CFTRP13569 1480 aa19.66■□□□□ 0.74
RAB40A-202ENST00000372633 KCNH8Q96L42 1107 aa19.64■□□□□ 0.73
RAB40A-202ENST00000372633 SETD5Q9C0A6 1442 aa19.64■□□□□ 0.73
RAB40A-202ENST00000372633 WDR97A6NE52 1622 aa19.6■□□□□ 0.73
RAB40A-202ENST00000372633 LRRC9Q6ZRR7 1453 aa19.6■□□□□ 0.73
RAB40A-202ENST00000372633 PRDM2Q13029 1718 aa19.6■□□□□ 0.73
RAB40A-202ENST00000372633 ANP32EQ9BTT0 268 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms