Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 PSMB4-206ENST00000495288 986 ntTSL 220.76■□□□□ 0.916e-18■□□□□ 8.1
YBX3P16989 PSMB4-207ENST00000495805 811 ntTSL 217.36■□□□□ 0.376e-18■□□□□ 8.1
YBX3P16989 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.661e-19■□□□□ 8.1
YBX3P16989 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC20.08■□□□□ 0.81e-19■□□□□ 8.1
YBX3P16989 CP-206ENST00000471356 671 ntTSL 26.55□□□□□ -1.363e-9■□□□□ 8.1
YBX3P16989 CP-214ENST00000497797 606 ntTSL 26.51□□□□□ -1.373e-9■□□□□ 8.1
YBX3P16989 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC28.45■■■□□ 2.148e-13■□□□□ 8.1
YBX3P16989 TARDBP-231ENST00000639599 1283 ntTSL 520.01■□□□□ 0.798e-13■□□□□ 8.1
YBX3P16989 TARDBP-221ENST00000619555 682 ntTSL 515.29■□□□□ 0.048e-13■□□□□ 8.1
YBX3P16989 TARDBP-202ENST00000315091 1835 ntTSL 5 BASIC14.22□□□□□ -0.138e-13■□□□□ 8.1
YBX3P16989 LINC01287-202ENST00000453187 430 ntTSL 314.09□□□□□ -0.158e-13■□□□□ 8.1
YBX3P16989 TARDBP-217ENST00000616545 920 ntTSL 5 BASIC14.04□□□□□ -0.168e-13■□□□□ 8.1
YBX3P16989 TARDBP-226ENST00000621790 1008 ntTSL 5 BASIC14.04□□□□□ -0.168e-13■□□□□ 8.1
YBX3P16989 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.188e-13■□□□□ 8.1
YBX3P16989 TARDBP-223ENST00000620632 706 ntTSL 313.86□□□□□ -0.198e-13■□□□□ 8.1
YBX3P16989 TARDBP-211ENST00000610369 563 ntTSL 512.97□□□□□ -0.338e-13■□□□□ 8.1
YBX3P16989 TARDBP-218ENST00000617172 980 ntTSL 512.97□□□□□ -0.338e-13■□□□□ 8.1
YBX3P16989 TARDBP-227ENST00000622057 706 ntTSL 512.8□□□□□ -0.368e-13■□□□□ 8.1
YBX3P16989 TARDBP-206ENST00000473869 1946 ntTSL 512.7□□□□□ -0.388e-13■□□□□ 8.1
YBX3P16989 TARDBP-222ENST00000620505 657 ntTSL 512.08□□□□□ -0.488e-13■□□□□ 8.1
YBX3P16989 TARDBP-230ENST00000639083 2269 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.498e-13■□□□□ 8.1
YBX3P16989 AL109811.4-201ENST00000614757 1793 ntTSL 5 BASIC11.18□□□□□ -0.628e-13■□□□□ 8.1
YBX3P16989 TARDBP-224ENST00000621573 992 ntTSL 310.19□□□□□ -0.788e-13■□□□□ 8.1
YBX3P16989 TARDBP-213ENST00000611963 739 ntTSL 510□□□□□ -0.818e-13■□□□□ 8.1
YBX3P16989 TARDBP-216ENST00000614494 515 ntTSL 59.82□□□□□ -0.848e-13■□□□□ 8.1
YBX3P16989 TARDBP-212ENST00000611008 929 ntTSL 58.32□□□□□ -1.088e-13■□□□□ 8.1
YBX3P16989 AL109811.4-203ENST00000612542 554 ntAPPRIS P1 TSL 55.94□□□□□ -1.468e-13■□□□□ 8.1
YBX3P16989 AL109811.4-202ENST00000611136 700 ntTSL 55.78□□□□□ -1.488e-13■□□□□ 8.1
YBX3P16989 TARDBP-208ENST00000477447 409 ntTSL 54.7□□□□□ -1.668e-13■□□□□ 8.1
YBX3P16989 WDR6-214ENST00000488572 610 ntTSL 427.99■■■□□ 2.071e-7■□□□□ 8.1
YBX3P16989 SUMF2-206ENST00000413952 881 ntTSL 327.63■■■□□ 2.011e-7■□□□□ 8.1
YBX3P16989 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.611e-7■□□□□ 8.1
YBX3P16989 SUMF2-214ENST00000452216 913 ntTSL 1 (best)24.8■■□□□ 1.561e-7■□□□□ 8.1
YBX3P16989 WDR6-206ENST00000438660 852 ntTSL 524.51■■□□□ 1.511e-7■□□□□ 8.1
YBX3P16989 IDH1-202ENST00000415282 942 ntTSL 223.84■■□□□ 1.411e-7■□□□□ 8.1
YBX3P16989 WDR6-212ENST00000472878 556 ntTSL 522.36■■□□□ 1.171e-7■□□□□ 8.1
YBX3P16989 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.971e-7■□□□□ 8.1
YBX3P16989 WDR6-216ENST00000489684 1155 ntTSL 221.01■□□□□ 0.951e-7■□□□□ 8.1
YBX3P16989 SUMF2-213ENST00000451338 912 ntAPPRIS ALT2 TSL 320.81■□□□□ 0.921e-7■□□□□ 8.1
YBX3P16989 WDR6-209ENST00000461687 555 ntTSL 420.73■□□□□ 0.911e-7■□□□□ 8.1
YBX3P16989 SUMF2-219ENST00000531229 737 ntTSL 218.91■□□□□ 0.621e-7■□□□□ 8.1
YBX3P16989 SUMF2-210ENST00000437307 947 ntTSL 2 BASIC18.78■□□□□ 0.61e-7■□□□□ 8.1
YBX3P16989 SUMF2-212ENST00000447501 1249 ntTSL 218.67■□□□□ 0.581e-7■□□□□ 8.1
YBX3P16989 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC18.35■□□□□ 0.531e-7■□□□□ 8.1
YBX3P16989 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.2■□□□□ 0.341e-7■□□□□ 8.1
YBX3P16989 OAZ2-208ENST00000560781 540 ntTSL 416.62■□□□□ 0.251e-7■□□□□ 8.1
YBX3P16989 DGUOK-206ENST00000489796 692 ntTSL 314.92□□□□□ -0.021e-7■□□□□ 8.1
YBX3P16989 WDR6-201ENST00000395474 4401 ntTSL 1 (best) BASIC14.15□□□□□ -0.141e-7■□□□□ 8.1
YBX3P16989 WDR6-221ENST00000610967 4259 ntTSL 1 (best) BASIC13.39□□□□□ -0.271e-7■□□□□ 8.1
YBX3P16989 WDR6-207ENST00000448293 3377 ntTSL 2 BASIC13.17□□□□□ -0.31e-7■□□□□ 8.1
YBX3P16989 SUMF2-215ENST00000461912 529 ntTSL 413.11□□□□□ -0.311e-7■□□□□ 8.1
YBX3P16989 WDR6-211ENST00000471162 3565 ntTSL 1 (best)12.47□□□□□ -0.411e-7■□□□□ 8.1
YBX3P16989 ARG2-203ENST00000557120 836 ntTSL 212.2□□□□□ -0.461e-7■□□□□ 8.1
YBX3P16989 WDR6-204ENST00000420783 3656 ntTSL 1 (best)12.06□□□□□ -0.481e-7■□□□□ 8.1
YBX3P16989 OAZ2-209ENST00000560837 707 ntTSL 211.95□□□□□ -0.51e-7■□□□□ 8.1
YBX3P16989 WDR6-208ENST00000452875 3916 ntTSL 1 (best)11.61□□□□□ -0.551e-7■□□□□ 8.1
YBX3P16989 WDR6-220ENST00000608424 4070 ntAPPRIS P1 TSL 1 (best) BASIC11.15□□□□□ -0.621e-7■□□□□ 8.1
YBX3P16989 ARG2-202ENST00000556491 457 ntTSL 58.19□□□□□ -1.11e-7■□□□□ 8.1
YBX3P16989 OAZ2-204ENST00000559665 541 ntTSL 48.13□□□□□ -1.111e-7■□□□□ 8.1
YBX3P16989 OAZ2-206ENST00000559912 576 ntTSL 58.13□□□□□ -1.111e-7■□□□□ 8.1
YBX3P16989 UBA6-206ENST00000514261 623 ntTSL 56.56□□□□□ -1.361e-7■□□□□ 8.1
YBX3P16989 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.731e-7■□□□□ 8.1
YBX3P16989 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC28.51■■■□□ 2.151e-7■□□□□ 8.1
YBX3P16989 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC27.65■■■□□ 2.021e-7■□□□□ 8.1
YBX3P16989 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC27.13■■□□□ 1.931e-7■□□□□ 8.1
YBX3P16989 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC27■■□□□ 1.911e-7■□□□□ 8.1
YBX3P16989 AKAP8L-216ENST00000599488 514 ntTSL 425.01■■□□□ 1.591e-7■□□□□ 8.1
YBX3P16989 AKAP8L-215ENST00000599137 608 ntTSL 424.87■■□□□ 1.571e-7■□□□□ 8.1
YBX3P16989 AKAP8L-203ENST00000594594 2251 ntTSL 523.01■■□□□ 1.271e-7■□□□□ 8.1
YBX3P16989 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC22.82■■□□□ 1.241e-7■□□□□ 8.1
YBX3P16989 AKAP8L-204ENST00000594893 1453 ntTSL 222.24■■□□□ 1.151e-7■□□□□ 8.1
YBX3P16989 AKAP8L-207ENST00000595136 531 ntTSL 421.73■■□□□ 1.071e-7■□□□□ 8.1
YBX3P16989 AKAP8L-220ENST00000609519 2113 ntTSL 221.47■■□□□ 1.031e-7■□□□□ 8.1
YBX3P16989 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.971e-7■□□□□ 8.1
YBX3P16989 AKT2-211ENST00000427375 554 ntTSL 419.3■□□□□ 0.681e-7■□□□□ 8.1
YBX3P16989 AKAP8L-219ENST00000601147 583 ntTSL 219.25■□□□□ 0.671e-7■□□□□ 8.1
YBX3P16989 AKAP8L-211ENST00000596213 929 ntTSL 318.94■□□□□ 0.621e-7■□□□□ 8.1
YBX3P16989 AKAP8L-205ENST00000595067 548 ntTSL 418.41■□□□□ 0.541e-7■□□□□ 8.1
YBX3P16989 AKAP8L-202ENST00000593845 2749 ntTSL 218.35■□□□□ 0.531e-7■□□□□ 8.1
YBX3P16989 AKAP8L-218ENST00000600247 583 ntTSL 417.44■□□□□ 0.381e-7■□□□□ 8.1
YBX3P16989 AKAP8L-213ENST00000597994 470 ntTSL 415.02■□□□□ -01e-7■□□□□ 8.1
YBX3P16989 XBP1-204ENST00000405219 1690 ntTSL 2 BASIC14.3□□□□□ -0.121e-7■□□□□ 8.1
YBX3P16989 GCN1-202ENST00000547263 366 ntTSL 314.2□□□□□ -0.141e-7■□□□□ 8.1
YBX3P16989 XBP1-206ENST00000484256 2173 ntTSL 214.06□□□□□ -0.161e-7■□□□□ 8.1
YBX3P16989 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC13.92□□□□□ -0.181e-7■□□□□ 8.1
YBX3P16989 ABCA11P-203ENST00000507854 1503 ntTSL 1 (best)11.84□□□□□ -0.511e-7■□□□□ 8.1
YBX3P16989 UBE2E1-206ENST00000467766 585 ntTSL 2 BASIC11.49□□□□□ -0.571e-7■□□□□ 8.1
YBX3P16989 AKAP8L-210ENST00000596195 553 ntTSL 411.18□□□□□ -0.621e-7■□□□□ 8.1
YBX3P16989 PRIM1-203ENST00000548173 590 ntTSL 410.44□□□□□ -0.741e-7■□□□□ 8.1
YBX3P16989 ZNF721-206ENST00000515578 1679 ntTSL 1 (best)9.67□□□□□ -0.861e-7■□□□□ 8.1
YBX3P16989 ABCA11P-201ENST00000451020 1815 ntTSL 2 BASIC9.66□□□□□ -0.861e-7■□□□□ 8.1
YBX3P16989 ZNF721-202ENST00000505900 664 ntTSL 1 (best)9.37□□□□□ -0.911e-7■□□□□ 8.1
YBX3P16989 UAP1-207ENST00000486089 1147 ntTSL 29.03□□□□□ -0.961e-7■□□□□ 8.1
YBX3P16989 ZNF721-203ENST00000506646 935 ntTSL 2 BASIC8.64□□□□□ -1.031e-7■□□□□ 8.1
YBX3P16989 ABCA11P-204ENST00000514396 1423 ntTSL 1 (best)8.58□□□□□ -1.041e-7■□□□□ 8.1
YBX3P16989 UBE2E1-210ENST00000493707 857 ntTSL 38□□□□□ -1.131e-7■□□□□ 8.1
YBX3P16989 PRIM1-205ENST00000550224 1206 ntTSL 57.79□□□□□ -1.161e-7■□□□□ 8.1
YBX3P16989 TMEM209-205ENST00000471985 571 ntTSL 47.76□□□□□ -1.171e-7■□□□□ 8.1
YBX3P16989 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.65□□□□□ -1.351e-7■□□□□ 8.1
YBX3P16989 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC6.41□□□□□ -1.381e-7■□□□□ 8.1
Retrieved 100 of 29,075 protein–RNA pairs in 1487 ms