RNA–Protein interactions for RNA: ENST00000550224.5

PRIM1-205, Transcript of DNA primase subunit 1, humanhuman

TSL 5

Gene PRIM1, Length 1,206 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1-205ENST00000550224 AEBP2Q6ZN18 517 aaPredicted RBP25.21■■□□□ 1.63
PRIM1-205ENST00000550224 CHIC1Q5VXU3 224 aa23.64■■□□□ 1.37
PRIM1-205ENST00000550224 SENP3Q9H4L4 574 aaPredicted RBP21.64■■□□□ 1.05
PRIM1-205ENST00000550224 PHF23Q9BUL5 403 aaPredicted RBP21.32■■□□□ 1
PRIM1-205ENST00000550224 FOXD1Q16676 465 aa20.21■□□□□ 0.83
PRIM1-205ENST00000550224 POTEDQ86YR6 584 aa19.45■□□□□ 0.7
PRIM1-205ENST00000550224 MSH5O43196 834 aa19.11■□□□□ 0.65
PRIM1-205ENST00000550224 PIAS4Q8N2W9 510 aaPredicted RBP18.84■□□□□ 0.61
PRIM1-205ENST00000550224 PLPPR3Q6T4P5 718 aa18.61■□□□□ 0.57
PRIM1-205ENST00000550224 PPP6R1Q9UPN7 881 aa18.54■□□□□ 0.56
PRIM1-205ENST00000550224 ADRA2BP18089 450 aa18.51■□□□□ 0.55
PRIM1-205ENST00000550224 MAPK8IP2Q13387 824 aaPredicted RBP17.15■□□□□ 0.34
PRIM1-205ENST00000550224 DMRT2Q9Y5R5 561 aa17.04■□□□□ 0.32
PRIM1-205ENST00000550224 SCAF1Q9H7N4 1312 aaKnown RBP16.98■□□□□ 0.31
PRIM1-205ENST00000550224 CACNB1Q02641 598 aaPredicted RBP16.79■□□□□ 0.28
PRIM1-205ENST00000550224 DCAF8L1A6NGE4 600 aa16.61■□□□□ 0.25
PRIM1-205ENST00000550224 PPP4R3CPQ6ZMV5 832 aa16.27■□□□□ 0.2
PRIM1-205ENST00000550224 RNF39Q9H2S5 420 aa16.22■□□□□ 0.19
PRIM1-205ENST00000550224 HOXD11P31277 338 aaPredicted RBP16.2■□□□□ 0.18
PRIM1-205ENST00000550224 CNKSR2Q8WXI2 1034 aa16.05■□□□□ 0.16
PRIM1-205ENST00000550224 C1QBPQ07021 282 aaKnown RBP16■□□□□ 0.15
PRIM1-205ENST00000550224 RNF216Q9NWF9 866 aaPredicted RBP15.99■□□□□ 0.15
PRIM1-205ENST00000550224 DNAJC5BQ9UF47 199 aa15.66■□□□□ 0.1
PRIM1-205ENST00000550224 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.63■□□□□ 0.09
PRIM1-205ENST00000550224 NCBP3Q53F19 620 aaKnown RBP15.55■□□□□ 0.08
PRIM1-205ENST00000550224 KCNA4P22459 653 aa15.31■□□□□ 0.04
PRIM1-205ENST00000550224 NISCHQ9Y2I1 1504 aa15.29■□□□□ 0.04
PRIM1-205ENST00000550224 NPM3O75607 178 aaKnown RBP15.24■□□□□ 0.03
PRIM1-205ENST00000550224 POTEHQ6S545 545 aa15.18■□□□□ 0.02
PRIM1-205ENST00000550224 CAPN15O75808 1086 aa15.17■□□□□ 0.02
PRIM1-205ENST00000550224 U3KPZ7 1027 aaPredicted RBP15.1■□□□□ 0.01
PRIM1-205ENST00000550224 SPINK5Q9NQ38 1064 aaPredicted RBP15.08■□□□□ 0
PRIM1-205ENST00000550224 DSG3P32926 999 aa15.06■□□□□ 0
PRIM1-205ENST00000550224 TRHP20396 242 aaPredicted RBP14.82□□□□□ -0.04
PRIM1-205ENST00000550224 ABCB7O75027 752 aa14.75□□□□□ -0.05
PRIM1-205ENST00000550224 APLP2Q06481 763 aa14.72□□□□□ -0.05
PRIM1-205ENST00000550224 ZNF219Q9P2Y4 722 aaPredicted RBP14.67□□□□□ -0.06
PRIM1-205ENST00000550224 SLC4A2P04920 1241 aa14.65□□□□□ -0.06
PRIM1-205ENST00000550224 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.58□□□□□ -0.08
PRIM1-205ENST00000550224 HNRNPUL2Q1KMD3 747 aaKnown RBP14.58□□□□□ -0.08
PRIM1-205ENST00000550224 SAMD1Q6SPF0 538 aaPredicted RBP14.46□□□□□ -0.09
PRIM1-205ENST00000550224 SLC4A1APQ9BWU0 796 aaKnown RBP14.45□□□□□ -0.1
PRIM1-205ENST00000550224 RBM42Q9BTD8 480 aaKnown RBP14.42□□□□□ -0.1
PRIM1-205ENST00000550224 CHRDL2Q6WN34 429 aa14.3□□□□□ -0.12
PRIM1-205ENST00000550224 POLA2Q14181 598 aa14.27□□□□□ -0.13
PRIM1-205ENST00000550224 ZBTB22O15209 634 aa14.16□□□□□ -0.14
PRIM1-205ENST00000550224 MYCNP04198 464 aaPredicted RBP14.12□□□□□ -0.15
PRIM1-205ENST00000550224 FOXD4L1Q9NU39 408 aa14.11□□□□□ -0.15
PRIM1-205ENST00000550224 SP7Q8TDD2 431 aaPredicted RBP14□□□□□ -0.17
PRIM1-205ENST00000550224 AKT1S1Q96B36 256 aa13.97□□□□□ -0.17
PRIM1-205ENST00000550224 ZBTB12Q9Y330 459 aaPredicted RBP13.89□□□□□ -0.19
PRIM1-205ENST00000550224 REM2Q8IYK8 340 aaPredicted RBP13.86□□□□□ -0.19
PRIM1-205ENST00000550224 HAX1O00165 279 aa13.84□□□□□ -0.19
PRIM1-205ENST00000550224 PIP4P2Q8N4L2 257 aa13.83□□□□□ -0.2
PRIM1-205ENST00000550224 ATF5Q9Y2D1 282 aaPredicted RBP13.82□□□□□ -0.2
PRIM1-205ENST00000550224 CSRNP3Q8WYN3 585 aa13.8□□□□□ -0.2
PRIM1-205ENST00000550224 OSCARQ8IYS5 282 aa13.79□□□□□ -0.2
PRIM1-205ENST00000550224 EHMT2Q96KQ7 1210 aa13.79□□□□□ -0.2
PRIM1-205ENST00000550224 PITPNM1O00562 1244 aa13.7□□□□□ -0.22
PRIM1-205ENST00000550224 FXR2P51116 673 aaKnown RBP eCLIP13.63□□□□□ -0.23
PRIM1-205ENST00000550224 ATXN8OSP0DMR3 200 aa13.6□□□□□ -0.23
PRIM1-205ENST00000550224 EVX2Q03828 476 aa13.51□□□□□ -0.25
PRIM1-205ENST00000550224 CLEC11AQ9Y240 323 aa13.44□□□□□ -0.26
PRIM1-205ENST00000550224 PRKAR2AP13861 404 aaKnown RBP13.41□□□□□ -0.26
PRIM1-205ENST00000550224 FBLN2P98095 1184 aa13.41□□□□□ -0.26
PRIM1-205ENST00000550224 SPDYE2BA6NHP3 402 aa13.4□□□□□ -0.26
PRIM1-205ENST00000550224 SPDYE6P0CI01 402 aa13.4□□□□□ -0.26
PRIM1-205ENST00000550224 SPDYE2Q495Y8 402 aa13.4□□□□□ -0.26
PRIM1-205ENST00000550224 CCDC180Q9P1Z9 1646 aa13.35□□□□□ -0.27
PRIM1-205ENST00000550224 SPDYE1Q8NFV5 336 aaPredicted RBP13.33□□□□□ -0.28
PRIM1-205ENST00000550224 ZNF692Q9BU19 519 aaPredicted RBP13.27□□□□□ -0.29
PRIM1-205ENST00000550224 C19orf67A6NJJ6 358 aa13.22□□□□□ -0.29
PRIM1-205ENST00000550224 GABBR2O75899 941 aa13.2□□□□□ -0.3
PRIM1-205ENST00000550224 LHX8Q68G74 356 aa13.17□□□□□ -0.3
PRIM1-205ENST00000550224 CHADLQ6NUI6 762 aa13.17□□□□□ -0.3
PRIM1-205ENST00000550224 MKRN4PQ13434 485 aaPredicted RBP13.16□□□□□ -0.3
PRIM1-205ENST00000550224 PRR29P0C7W0 189 aa13.11□□□□□ -0.31
PRIM1-205ENST00000550224 SSUH2Q9Y2M2 353 aa13.1□□□□□ -0.31
PRIM1-205ENST00000550224 PABPN1Q86U42 306 aaKnown RBP eCLIP13.03□□□□□ -0.32
PRIM1-205ENST00000550224 CD44P16070 742 aaKnown RBP12.94□□□□□ -0.34
PRIM1-205ENST00000550224 FARP1Q9Y4F1 1045 aaPredicted RBP12.88□□□□□ -0.35
PRIM1-205ENST00000550224 POTEIP0CG38 1075 aa12.86□□□□□ -0.35
PRIM1-205ENST00000550224 DCBLD2Q96PD2 775 aa12.85□□□□□ -0.35
PRIM1-205ENST00000550224 PLSCR2Q9NRY7 297 aa12.84□□□□□ -0.35
PRIM1-205ENST00000550224 ZCCHC6Q5VYS8 1495 aaKnown RBP12.79□□□□□ -0.36
PRIM1-205ENST00000550224 CLCN6P51797 869 aa12.79□□□□□ -0.36
PRIM1-205ENST00000550224 DCAF8L2P0C7V8 631 aa12.76□□□□□ -0.37
PRIM1-205ENST00000550224 ZRANB1Q9UGI0 708 aa12.73□□□□□ -0.37
PRIM1-205ENST00000550224 DCAF1Q9Y4B6 1507 aa12.72□□□□□ -0.37
PRIM1-205ENST00000550224 SPDYE4A6NLX3 237 aa12.63□□□□□ -0.39
PRIM1-205ENST00000550224 ZNF579Q8NAF0 562 aaKnown RBP12.63□□□□□ -0.39
PRIM1-205ENST00000550224 MYO15BQ96JP2 1530 aa12.61□□□□□ -0.39
PRIM1-205ENST00000550224 ABCC9O60706 1549 aa12.6□□□□□ -0.39
PRIM1-205ENST00000550224 GALR2O43603 387 aaPredicted RBP12.57□□□□□ -0.4
PRIM1-205ENST00000550224 CREBZFQ9NS37 354 aa12.56□□□□□ -0.4
PRIM1-205ENST00000550224 STAG3Q9UJ98 1225 aa12.56□□□□□ -0.4
PRIM1-205ENST00000550224 PAK3O75914 559 aaPredicted RBP12.55□□□□□ -0.4
PRIM1-205ENST00000550224 NACADO15069 1562 aa12.52□□□□□ -0.41
PRIM1-205ENST00000550224 PROM2Q8N271 834 aa12.51□□□□□ -0.41
PRIM1-205ENST00000550224 OTUD5Q96G74 571 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms