Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC14.09□□□□□ -0.15
VCANP13611 SPG20-AS1-203ENST00000493739 566 ntTSL 3 BASIC14.09□□□□□ -0.15
VCANP13611 NDUFB2P1-201ENST00000506966 295 ntBASIC14.09□□□□□ -0.15
VCANP13611 AC134312.5-202ENST00000562705 756 ntTSL 3 BASIC14.09□□□□□ -0.15
VCANP13611 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC14.09□□□□□ -0.15
VCANP13611 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 FBXO39-201ENST00000321535 1677 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 PES1P2-201ENST00000449745 1735 ntBASIC14.09□□□□□ -0.15
VCANP13611 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
VCANP13611 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
VCANP13611 TPI1P3-201ENST00000335020 740 ntBASIC14.09□□□□□ -0.15
VCANP13611 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 RBMXP1-201ENST00000408004 1191 ntBASIC14.09□□□□□ -0.15
VCANP13611 AC009238.3-201ENST00000512705 217 ntBASIC14.09□□□□□ -0.15
VCANP13611 Metazoa_SRP.153-201ENST00000620153 341 ntBASIC14.09□□□□□ -0.15
VCANP13611 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
VCANP13611 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.09□□□□□ -0.15
VCANP13611 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.15
VCANP13611 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.08□□□□□ -0.15
VCANP13611 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.08□□□□□ -0.15
VCANP13611 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.08□□□□□ -0.15
VCANP13611 AC026691.1-201ENST00000602502 2017 ntBASIC14.08□□□□□ -0.15
VCANP13611 UGT1A6-202ENST00000373424 1128 ntTSL 2 BASIC14.08□□□□□ -0.15
VCANP13611 RPSAP5-201ENST00000485258 884 ntBASIC14.08□□□□□ -0.15
VCANP13611 AL121790.2-201ENST00000553425 379 ntTSL 4 BASIC14.08□□□□□ -0.15
VCANP13611 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
VCANP13611 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
VCANP13611 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.08□□□□□ -0.16
VCANP13611 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC14.08□□□□□ -0.16
VCANP13611 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.08□□□□□ -0.16
VCANP13611 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 MED20-204ENST00000409312 932 ntTSL 2 BASIC14.08□□□□□ -0.16
VCANP13611 ZBTB46-AS1-201ENST00000435912 533 ntTSL 3 BASIC14.08□□□□□ -0.16
VCANP13611 AC100797.1-201ENST00000520760 316 ntTSL 2 BASIC14.08□□□□□ -0.16
VCANP13611 CD44-224ENST00000526669 870 ntTSL 5 BASIC14.08□□□□□ -0.16
VCANP13611 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 MLXIPL-201ENST00000313375 3278 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 MLXIPL-206ENST00000434326 3252 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 EEF1G-201ENST00000329251 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 C1QTNF3-201ENST00000231338 1959 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 AL356583.3-201ENST00000412354 417 ntBASIC14.08□□□□□ -0.16
VCANP13611 EEF1GP3-201ENST00000421044 1288 ntBASIC14.08□□□□□ -0.16
VCANP13611 AC092100.1-201ENST00000435148 702 ntTSL 3 BASIC14.08□□□□□ -0.16
VCANP13611 SMIM26-202ENST00000435844 575 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.16
VCANP13611 SLC25A5P6-201ENST00000515328 886 ntBASIC14.08□□□□□ -0.16
VCANP13611 HIST1H3E-201ENST00000614911 462 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
VCANP13611 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.07□□□□□ -0.16
VCANP13611 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC14.07□□□□□ -0.16
VCANP13611 PSMA1-201ENST00000396394 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC14.07□□□□□ -0.16
VCANP13611 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
VCANP13611 RPL10P12-201ENST00000427342 318 ntBASIC14.07□□□□□ -0.16
VCANP13611 PTPA-219ENST00000435305 530 ntTSL 2 BASIC14.07□□□□□ -0.16
VCANP13611 CMTM1-206ENST00000457188 765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 RPL18P1-201ENST00000497218 552 ntBASIC14.07□□□□□ -0.16
VCANP13611 CMTM1-215ENST00000531885 590 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 AC099524.1-203ENST00000565272 756 ntTSL 5 BASIC14.07□□□□□ -0.16
VCANP13611 SMIM6-202ENST00000579469 957 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 FAM230A-201ENST00000615181 315 ntTSL 5 BASIC14.07□□□□□ -0.16
VCANP13611 AC080038.2-201ENST00000617734 423 ntBASIC14.07□□□□□ -0.16
VCANP13611 DBNDD1-203ENST00000392973 2689 ntTSL 2 BASIC14.07□□□□□ -0.16
VCANP13611 DNAJB6-204ENST00000429029 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 UBE2I-204ENST00000397515 3109 ntAPPRIS P1 TSL 3 BASIC14.07□□□□□ -0.16
VCANP13611 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 FATE1-201ENST00000370350 1072 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 ALDOAP2-201ENST00000398050 1076 ntBASIC14.07□□□□□ -0.16
VCANP13611 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
VCANP13611 YBX1P3-201ENST00000468366 909 ntBASIC14.07□□□□□ -0.16
VCANP13611 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC14.07□□□□□ -0.16
VCANP13611 LINC00115-201ENST00000473798 1317 ntBASIC14.07□□□□□ -0.16
VCANP13611 FAM90A22P-201ENST00000400142 1395 ntBASIC14.07□□□□□ -0.16
VCANP13611 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 KRT37-201ENST00000225550 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.07□□□□□ -0.16
VCANP13611 ACE3P-201ENST00000423435 1973 ntBASIC14.07□□□□□ -0.16
VCANP13611 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
VCANP13611 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
VCANP13611 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
VCANP13611 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
VCANP13611 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.07□□□□□ -0.16
VCANP13611 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms