Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CUEDC1Q9NWM3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CUEDC1Q9NWM3 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
CUEDC1Q9NWM3 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CUEDC1Q9NWM3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CUEDC1Q9NWM3 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CUEDC1Q9NWM3 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC21.72■■□□□ 1.07
CUEDC1Q9NWM3 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.72■■□□□ 1.07
CUEDC1Q9NWM3 AC009102.2-201ENST00000606772 1639 ntBASIC21.72■■□□□ 1.07
CUEDC1Q9NWM3 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CUEDC1Q9NWM3 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.72■■□□□ 1.07
CUEDC1Q9NWM3 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC21.72■■□□□ 1.07
CUEDC1Q9NWM3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CUEDC1Q9NWM3 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
CUEDC1Q9NWM3 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 ANOS2P-203ENST00000472227 1816 ntBASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CUEDC1Q9NWM3 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CUEDC1Q9NWM3 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CUEDC1Q9NWM3 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CUEDC1Q9NWM3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.68■■□□□ 1.06
CUEDC1Q9NWM3 AL512631.2-201ENST00000604634 923 ntBASIC21.68■■□□□ 1.06
CUEDC1Q9NWM3 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
CUEDC1Q9NWM3 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CUEDC1Q9NWM3 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.68■■□□□ 1.06
CUEDC1Q9NWM3 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
CUEDC1Q9NWM3 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.68■■□□□ 1.06
CUEDC1Q9NWM3 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 AC079630.1-202ENST00000618127 1840 ntBASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CUEDC1Q9NWM3 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CUEDC1Q9NWM3 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.66■■□□□ 1.06
CUEDC1Q9NWM3 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CUEDC1Q9NWM3 AC131281.2-201ENST00000520478 145 ntBASIC21.66■■□□□ 1.06
CUEDC1Q9NWM3 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CUEDC1Q9NWM3 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.66■■□□□ 1.06
CUEDC1Q9NWM3 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.66■■□□□ 1.06
CUEDC1Q9NWM3 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
CUEDC1Q9NWM3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
CUEDC1Q9NWM3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.65■■□□□ 1.06
CUEDC1Q9NWM3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms