Protein–RNA interactions for Protein: Q9H3S1

SEMA4A, Semaphorin-4A, humanhuman

Predictions only

Length 761 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4AQ9H3S1 AL162430.1-201ENST00000480705 870 ntBASIC23.83■■□□□ 1.41
SEMA4AQ9H3S1 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.83■■□□□ 1.41
SEMA4AQ9H3S1 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.83■■□□□ 1.41
SEMA4AQ9H3S1 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC23.83■■□□□ 1.41
SEMA4AQ9H3S1 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC23.83■■□□□ 1.41
SEMA4AQ9H3S1 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC23.83■■□□□ 1.41
SEMA4AQ9H3S1 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC23.83■■□□□ 1.4
SEMA4AQ9H3S1 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.83■■□□□ 1.4
SEMA4AQ9H3S1 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.4
SEMA4AQ9H3S1 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC23.82■■□□□ 1.4
SEMA4AQ9H3S1 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
SEMA4AQ9H3S1 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC23.82■■□□□ 1.4
SEMA4AQ9H3S1 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SEMA4AQ9H3S1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.82■■□□□ 1.4
SEMA4AQ9H3S1 AC011551.1-201ENST00000614101 683 ntBASIC23.82■■□□□ 1.4
SEMA4AQ9H3S1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.4
SEMA4AQ9H3S1 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
SEMA4AQ9H3S1 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.82■■□□□ 1.4
SEMA4AQ9H3S1 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SEMA4AQ9H3S1 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC23.82■■□□□ 1.4
SEMA4AQ9H3S1 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 RBM38-205ENST00000440234 686 ntTSL 2 BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC23.81■■□□□ 1.4
SEMA4AQ9H3S1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 CLTA-210ENST00000540080 989 ntTSL 2 BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
SEMA4AQ9H3S1 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC23.79■■□□□ 1.4
SEMA4AQ9H3S1 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.79■■□□□ 1.4
SEMA4AQ9H3S1 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC23.79■■□□□ 1.4
SEMA4AQ9H3S1 AL136967.2-201ENST00000623968 743 ntBASIC23.79■■□□□ 1.4
SEMA4AQ9H3S1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SEMA4AQ9H3S1 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
SEMA4AQ9H3S1 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC23.78■■□□□ 1.4
SEMA4AQ9H3S1 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SEMA4AQ9H3S1 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC23.78■■□□□ 1.4
SEMA4AQ9H3S1 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC23.78■■□□□ 1.4
SEMA4AQ9H3S1 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC23.78■■□□□ 1.4
SEMA4AQ9H3S1 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SEMA4AQ9H3S1 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
SEMA4AQ9H3S1 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC23.78■■□□□ 1.4
SEMA4AQ9H3S1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
SEMA4AQ9H3S1 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
SEMA4AQ9H3S1 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC23.77■■□□□ 1.4
SEMA4AQ9H3S1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
SEMA4AQ9H3S1 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC23.77■■□□□ 1.4
SEMA4AQ9H3S1 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC23.77■■□□□ 1.4
SEMA4AQ9H3S1 AC024257.2-201ENST00000549699 147 ntBASIC23.77■■□□□ 1.4
SEMA4AQ9H3S1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC23.77■■□□□ 1.4
SEMA4AQ9H3S1 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SEMA4AQ9H3S1 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SEMA4AQ9H3S1 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
SEMA4AQ9H3S1 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
SEMA4AQ9H3S1 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC23.77■■□□□ 1.39
SEMA4AQ9H3S1 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.77■■□□□ 1.39
SEMA4AQ9H3S1 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
SEMA4AQ9H3S1 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
SEMA4AQ9H3S1 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SEMA4AQ9H3S1 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SEMA4AQ9H3S1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
SEMA4AQ9H3S1 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC23.76■■□□□ 1.39
SEMA4AQ9H3S1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
SEMA4AQ9H3S1 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
SEMA4AQ9H3S1 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SEMA4AQ9H3S1 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.75■■□□□ 1.39
SEMA4AQ9H3S1 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.75■■□□□ 1.39
SEMA4AQ9H3S1 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC23.75■■□□□ 1.39
SEMA4AQ9H3S1 GAK-223ENST00000628912 497 ntTSL 5 BASIC23.75■■□□□ 1.39
SEMA4AQ9H3S1 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
SEMA4AQ9H3S1 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SEMA4AQ9H3S1 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SEMA4AQ9H3S1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC23.74■■□□□ 1.39
SEMA4AQ9H3S1 AC087623.3-201ENST00000607047 1098 ntBASIC23.74■■□□□ 1.39
SEMA4AQ9H3S1 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.74■■□□□ 1.39
SEMA4AQ9H3S1 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
SEMA4AQ9H3S1 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC23.74■■□□□ 1.39
SEMA4AQ9H3S1 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC23.74■■□□□ 1.39
SEMA4AQ9H3S1 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC23.74■■□□□ 1.39
SEMA4AQ9H3S1 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SEMA4AQ9H3S1 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
SEMA4AQ9H3S1 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms