Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TIMP4Q99727 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.65■□□□□ 0.9
TIMP4Q99727 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC20.65■□□□□ 0.9
TIMP4Q99727 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC20.65■□□□□ 0.9
TIMP4Q99727 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TIMP4Q99727 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TIMP4Q99727 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TIMP4Q99727 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TIMP4Q99727 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
TIMP4Q99727 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC20.64■□□□□ 0.89
TIMP4Q99727 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
TIMP4Q99727 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TIMP4Q99727 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TIMP4Q99727 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.63■□□□□ 0.89
TIMP4Q99727 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.63■□□□□ 0.89
TIMP4Q99727 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TIMP4Q99727 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.63■□□□□ 0.89
TIMP4Q99727 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
TIMP4Q99727 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.63■□□□□ 0.89
TIMP4Q99727 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TIMP4Q99727 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TIMP4Q99727 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.62■□□□□ 0.89
TIMP4Q99727 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.62■□□□□ 0.89
TIMP4Q99727 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TIMP4Q99727 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC20.62■□□□□ 0.89
TIMP4Q99727 AC019069.1-201ENST00000610008 1333 ntBASIC20.62■□□□□ 0.89
TIMP4Q99727 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.62■□□□□ 0.89
TIMP4Q99727 AL139246.5-201ENST00000606645 996 ntBASIC20.62■□□□□ 0.89
TIMP4Q99727 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
TIMP4Q99727 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TIMP4Q99727 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TIMP4Q99727 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
TIMP4Q99727 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.62■□□□□ 0.89
TIMP4Q99727 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
TIMP4Q99727 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TIMP4Q99727 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP4Q99727 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.61■□□□□ 0.89
TIMP4Q99727 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP4Q99727 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP4Q99727 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
TIMP4Q99727 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP4Q99727 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP4Q99727 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP4Q99727 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.61■□□□□ 0.89
TIMP4Q99727 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP4Q99727 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP4Q99727 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP4Q99727 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
TIMP4Q99727 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.61■□□□□ 0.89
TIMP4Q99727 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP4Q99727 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.6■□□□□ 0.89
TIMP4Q99727 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.6■□□□□ 0.89
TIMP4Q99727 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC20.6■□□□□ 0.89
TIMP4Q99727 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP4Q99727 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.6■□□□□ 0.89
TIMP4Q99727 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.6■□□□□ 0.89
TIMP4Q99727 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC20.6■□□□□ 0.89
TIMP4Q99727 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP4Q99727 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP4Q99727 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP4Q99727 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
TIMP4Q99727 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TIMP4Q99727 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
TIMP4Q99727 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.59■□□□□ 0.89
TIMP4Q99727 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TIMP4Q99727 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.59■□□□□ 0.89
TIMP4Q99727 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TIMP4Q99727 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TIMP4Q99727 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
TIMP4Q99727 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
TIMP4Q99727 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.59■□□□□ 0.89
TIMP4Q99727 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC20.59■□□□□ 0.89
TIMP4Q99727 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
TIMP4Q99727 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TIMP4Q99727 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TIMP4Q99727 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.89
TIMP4Q99727 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TIMP4Q99727 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TIMP4Q99727 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TIMP4Q99727 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
TIMP4Q99727 AC096631.2-201ENST00000436136 790 ntBASIC20.58■□□□□ 0.89
TIMP4Q99727 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
TIMP4Q99727 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TIMP4Q99727 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
TIMP4Q99727 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TIMP4Q99727 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
TIMP4Q99727 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
TIMP4Q99727 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
TIMP4Q99727 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TIMP4Q99727 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
TIMP4Q99727 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
TIMP4Q99727 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
TIMP4Q99727 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TIMP4Q99727 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TIMP4Q99727 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC20.57■□□□□ 0.88
TIMP4Q99727 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.57■□□□□ 0.88
TIMP4Q99727 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.57■□□□□ 0.88
TIMP4Q99727 AL161729.1-201ENST00000604104 1402 ntBASIC20.57■□□□□ 0.88
TIMP4Q99727 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TIMP4Q99727 AC110285.6-201ENST00000617652 491 ntBASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms