Protein–RNA interactions for Protein: Q8TD31

CCHCR1, Coiled-coil alpha-helical rod protein 1, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1Q8TD31 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 AC131274.2-201ENST00000580697 1507 ntBASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 PRTG-204ENST00000561292 833 ntTSL 3 BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 MIR4281-201ENST00000580852 62 ntBASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.34■■□□□ 1.33
CCHCR1Q8TD31 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCHCR1Q8TD31 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
CCHCR1Q8TD31 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCHCR1Q8TD31 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCHCR1Q8TD31 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCHCR1Q8TD31 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CCHCR1Q8TD31 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CCHCR1Q8TD31 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CCHCR1Q8TD31 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
CCHCR1Q8TD31 AL451085.2-201ENST00000605085 799 ntBASIC23.33■■□□□ 1.33
CCHCR1Q8TD31 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CCHCR1Q8TD31 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC23.33■■□□□ 1.32
CCHCR1Q8TD31 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC23.33■■□□□ 1.32
CCHCR1Q8TD31 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
CCHCR1Q8TD31 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC23.33■■□□□ 1.32
CCHCR1Q8TD31 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC23.32■■□□□ 1.32
CCHCR1Q8TD31 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CCHCR1Q8TD31 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC23.31■■□□□ 1.32
CCHCR1Q8TD31 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC23.31■■□□□ 1.32
CCHCR1Q8TD31 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC23.31■■□□□ 1.32
CCHCR1Q8TD31 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC23.31■■□□□ 1.32
CCHCR1Q8TD31 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
CCHCR1Q8TD31 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCHCR1Q8TD31 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
CCHCR1Q8TD31 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.31■■□□□ 1.32
CCHCR1Q8TD31 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
CCHCR1Q8TD31 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCHCR1Q8TD31 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCHCR1Q8TD31 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCHCR1Q8TD31 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CCHCR1Q8TD31 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
CCHCR1Q8TD31 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CCHCR1Q8TD31 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.3■■□□□ 1.32
CCHCR1Q8TD31 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCHCR1Q8TD31 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.29■■□□□ 1.32
CCHCR1Q8TD31 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC23.29■■□□□ 1.32
CCHCR1Q8TD31 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCHCR1Q8TD31 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
CCHCR1Q8TD31 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCHCR1Q8TD31 RNF146-205ENST00000477776 762 ntTSL 3 BASIC23.29■■□□□ 1.32
CCHCR1Q8TD31 AC009299.2-201ENST00000482477 511 ntBASIC23.29■■□□□ 1.32
CCHCR1Q8TD31 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
CCHCR1Q8TD31 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
CCHCR1Q8TD31 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23.29■■□□□ 1.32
CCHCR1Q8TD31 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 BX664725.1-201ENST00000438252 379 ntBASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 C1orf229-201ENST00000623686 2258 ntBASIC23.28■■□□□ 1.32
CCHCR1Q8TD31 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCHCR1Q8TD31 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCHCR1Q8TD31 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCHCR1Q8TD31 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC23.27■■□□□ 1.32
CCHCR1Q8TD31 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC23.27■■□□□ 1.32
CCHCR1Q8TD31 AC137630.3-201ENST00000607245 391 ntBASIC23.27■■□□□ 1.32
CCHCR1Q8TD31 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC23.27■■□□□ 1.32
CCHCR1Q8TD31 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CCHCR1Q8TD31 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC23.27■■□□□ 1.32
CCHCR1Q8TD31 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC23.27■■□□□ 1.32
CCHCR1Q8TD31 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CCHCR1Q8TD31 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms